Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgaataacagattctttgatgaacttttaagtaattgaggggtatcataaaattattgggttgtggcataaatctttaaaatataataatcaaataat...

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgaataacagattctttgatgaacttttaagtaattgaggggtatcataaaattattgggttgtggcataaatctttaaaatataataatcaaataat
               | || ||||| ||||||    | ||||||||||||||||||||  | | |||||| |||||||||||||| || |      || | |  |    ||||   |   |  |   | || || ||||  |   || |       |||||       | ||  | |   |  
---------------CTATAGATGCTTTGCCTTCAACAGCTCATCCAATGACTCAATTTGCTAGTGGTGTTATGGCCCTTCAGgtggattgctctgttatgtactattttttt---tttctatgcattctcttagaatttgtttattttcaggagcatcttatcttgttgattgttattcag-

upper sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 9
ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgaataacagattctttgatgaacttt--taagtaattgaggggtatcataaaattattgggttgtggcataaatctt--taaaatataataatcaaataat
|| ||| |||||| || || |||||  | |||   || |||||||||||||| || ||  |||| ||||||||||||||||||||||| |||  || |||   |   | | |  |   ||||||    || | ||      |  |  || |    | | || |  | ||    |||       |   
ATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAGgttgattaatggactctgaaacatattctgttgtttaattgcattgt-ttatggttcaaccgttttttcagctcagtcatagtgaatctgaatggctgttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593279|gb|DB966104.1|DB966104
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAGG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgaataac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAGG