Sequence
atgc intronic sequence ATGC exonic sequenceGCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgtgccaatataggcttatctttatacatgtattatagagagtaatatgaggatatacatacatattgagtttcatttctgataactatgatg...
Basic information
species | Glycine max |
transcript | GLYMA08G15150.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G15150.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g29860.1 (Oryza sativa), 5'ss of exon 9
GCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgta--aatgtgtgccaatataggcttatctttatacatgtattatagagagtaatatgaggatatacatacatattgagtttcatttctgataactatgatg-------------------
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GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaaattctgtttcttcctcactttctaatccttgttggaca-atttttctgttcttatgttgccgtccttcttttgtttacctgcttctataacccatcatttctttctgctag
upper sequence: GLYMA08G15150.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 9
GCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgtgccaatataggcttatctttatacatgtattatagagagt----aatatgaggatatacatacatattgagtttcatttctgataactatgatg--------------------------------------
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GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCTGgtataactcgattgtctcc--ctaatctttttgtaactatcaccttgcttcctcagtatctaactgtcttctcttgggttgtcttatttcctctccccgacaaatcacttccatctactctgggcttttgactttttgctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19347391|gb|BM892271.1|BM892271EST: ACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAG GTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGT
genomic: ACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgt ... tttcctgtagGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACAAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGgtaaatgtgtgccaatataggcttatctttatacatgtattatagagagtaatatgaggatatacatacatattgagtttcatttctgataactatgatg
- - AAAGAA
- - AAGAAA