1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAACTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaaccaacctctagtttgactatttgcaaccagttcaggtgatggtgacagcgaaaaattgtttgcttataaagtctaggagccatgctatgc...
species | Glycine max |
transcript | GLYMA08G13300.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|8404346|gb|BE059980.1|BE059980
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|193688874|gb|FK627851.1|FK627851
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|208035181|gb|GD836407.1|GD836407
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|192326977|gb|FK019239.1|FK019239
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|4283991|gb|AI440725.1|AI440725
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCCGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|208038580|gb|GD833290.1|GD833290
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
genomic: CAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAACTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaaccaacctctagtttgactatttgcaaccagttcaggtgatggtgacagcgaaaaattgtttgcttataaagtctaggagccatgctatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG