1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAACTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaaccaacctctagtttgactatttgcaaccagttcaggtgatggtgacagcgaaaaattgtttgcttataaagtctaggagccatgctatgc...
species | Glycine max |
transcript | GLYMA08G13300.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|6567090|gb|AW234717.1|AW234717
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: TGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|10843935|gb|BF067288.1|BF067288
genomic: TGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: TATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|8404346|gb|BE059980.1|BE059980
genomic: TATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|193688874|gb|FK627851.1|FK627851
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|208035181|gb|GD836407.1|GD836407
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGTAAAAAAGTTGTTTGTGATCCATCATATTTGCCTGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|26048272|gb|CA784798.1|CA784798
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGC-AAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|192326977|gb|FK019239.1|FK019239
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|4283991|gb|AI440725.1|AI440725
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCCGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|16105598|gb|BI893338.1|BI893338
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: ATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|26268738|gb|CA819801.1|CA819801
genomic: ATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|192327651|gb|FK020670.1|FK020670
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: AAAGTGCAAAAAAGTTGTTTGTGATCTATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|58015032|gb|CX701774.1|CX701774
genomic: AAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|15203704|gb|BI426472.1|BI426472
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|58016818|gb|CX703560.1|CX703560
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|22521741|gb|BU080552.1|BU080552
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCAEST: gi|208038580|gb|GD833290.1|GD833290
genomic: CTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
EST: CAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAG GTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
genomic: CAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaa ... atttcaacagGTGAGGAAGGTTGGTAGGGTTGCAAGAGCAATAGCCATAATGAGTCACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTGATGAGGAAGGAAAGGTTGTTGGTGTCACATCTGAAGGGGAAACTGCAAAGTGCAAAAAAGTTGTTTGTGATCCATCATATTTGCCCGGCAAGgtattagaaaccaacctctagtttgactatttgcaaccagttcaggtgatggtgacagcgaaaaattgtttgcttataaagtctaggagccatgctatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG