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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAAGGACTTTCTCGACTTACGACTGTGGTTCCTGGGACAGATGAGTCAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatctctttgaaaaaaaatgcatcatatcctatacataaattatttgctttgagtaatatatttttttagtgtttctgtttgcagtgtcgtgta...

Basic information

species Glycine max
transcript GLYMA08G13290.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10844923|gb|BF068113.1|BF068113
EST:     AATTAGCAAGCTGGTGCAGCCACTCTATAAGCTAGTAGAGCTACATGAAG                         GT-CGTGATATCACCCAACTTGCC-TTTGCTGAGCGAGAATTG
genomic: AATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGA-Ggttcaaaatc ... atttgttcagGTTCGTGATATCACCCA-CTTGCCATTTGCTGAGCGAGAATTG
EST: gi|22930089|gb|BU547228.1|BU547228
EST:     CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG                         GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
EST: gi|17023140|gb|BM094174.1|BM094174
EST:     CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG                         GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGA
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGA
EST: gi|21676800|gb|BQ629151.1|BQ629151
EST:     CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG                         GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTGAAGGACTTTCTCGACTTACGACTGTGGTTCCTGGGACAGATGAGTCAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatctctttgaaaaaaaatgcatcatatcctatacataaattatttgctttgagtaatatatttttttagtgtttctgtttgcagtgtcgtgta

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa