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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGGACAGACAGGGCAAACCTCATTTCTTCTGCTCCATGgttggtactaccaagagattctttgtagttgaatatttgtaaaacacacacatacttttactgttaaaaaataattacctacatgaataaagcaaagaatatgtttgatttagttattgactcttgaacatgtttgtggcag

Basic information

species Glycine max
transcript GLYMA08G12360.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12360.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 7
----------------------------------------------------------TTGCAGGACAGACAGGGCAAACCTCATTTCTTCTGCTCCATGgttggtactaccaagagattctttgtagttgaatatttgtaaaacacacacatacttttactgttaaaaaataattacctacatgaataaagcaaagaatatgtttgatttagttattgactcttgaacatgtttgtggcag
                                                           ||| | || |||| ||| |||||||| |||||||||||||||||||||  |  |  || |||  |  | ||   | ||||   ||  |  | |||||  |||    |   |  |   ||  | |||  || | || | | |||                                        
CACATCTCTTGACAGCCAGTGGTGCATACAGACATCGTCCTGAAACAACCCAACATAACTGCCGAACTGACAAGGCCAACCTCATATCTTCTGCTCCATGgttggtatcagaattagcttccat-caattttgtgtttgcctaaatctaatatactaatacacacacttaccatagacacaaatgcctataccaga-actat----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525738|gb|BU084549.1|BU084549
EST:     TTGCAGGACAGACAGGGCAAACCTCATTTCTTCTGCTCCATG                         GATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGG
genomic: TTGCAGGACAGACAGGGCAAACCTCATTTCTTCTGCTCCATGgttggtacta ... tttgtggcagGATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGG
EST: gi|22525586|gb|BU084397.1|BU084397
EST:     TTGCAGGACAGACAGGGCAAACCTCATTTCTTCTGCTCCATG                         GATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGG
genomic: TTGCAGGACAGACAGGGCAAACCTCATTTCTTCTGCTCCATGgttggtacta ... tttgtggcagGATAAAGATTCCATACCCTCTTGAGTGGGGTGCTCCTACATTTGATGCTGG