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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGTAgtgagttttacaactagaagcaatttatactgaaaagtttcattacagcaggtgcctttaaatattgacgaatggtcaaggaagtgcaggttcttctact...

Basic information

species Glycine max
transcript GLYMA08G10850.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10850.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 9
GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGTAgtgagttttacaactagaagcaatttatactgaaaagtttcattacagcaggtgcctttaaatattgacgaatggtcaaggaagtgcaggttcttctact
|| |||||||||||||||||  |||||||||| || || ||||| |||||||||||  |||  ||||| |||||||| ||  |||| ||  | |||||  ||||||     | |  ||   ||| || |    ||  || | |   |     |   | ||   |                                    
GAGGTTATTGCTGGAGAAGGAATGATTGTAACTGCAGGAGCTATTGATTGTCATGTACATTTCATATGTCCTCAATTGGTGTATGAAGCAGTGTCAAGCGgtgagtagagtagcctgactgaatataaagcataagtttgcctctaaattcataagtatatgcag-----------------------------------

upper sequence: GLYMA08G10850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGTAgtgagtttt----acaactagaagcaatttatactgaaaagt-ttcattacagca--ggtgcctttaaatattgacgaatggtcaaggaagtgcaggttcttctact
|| || || |||||||||||  ||||||| || || ||||| ||||| || |||||| | | ||||||||||||||| |   |||| |||||||||||| ||||| |||    |  ||| |||| |  ||   |||  |||| || |||    ||        ||  ||| |     ||| |    | | ||   | |  |      
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgc-ctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat------