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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGgttcacatgatattcttttgagtatttaaaaaatctaatgttgacactttacttacagttctgtattttactttattaaattctcaaaacaagttatcgcttatcaggttttctcgaattgtatcatcag

Basic information

species Glycine max
transcript GLYMA08G06860.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06860.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv03s0088g01260.t01 (Vitis vinifera), 5'ss of exon 9
GATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGgttcacatgatattcttttgagtatttaaaaaatctaatg--ttgacactttacttacagttctgtattttactttattaaattctcaaaacaagttatcgcttatcaggttttctcgaattgtatcatcag
|||||  | ||||||||  |||| || | ||||||  | |||| |||||||||||||||||||||||| || |||||||||  |    |   |||||     || |||| | |  |||  || |  ||| |  ||| || ||  |      |    |  ||||||||      || |  ||| ||||                       
GATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAATTGGTCTCAACTTTGCCCCACTTGCAAGgttttctcagtgaacttttt--ctttcaaaagaacagatgcattaatgcttgaaatactgtcctaaacagatttggtgtgcattctcaa----tcttgtttcttttcag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5820220|gb|AI988426.1|AI988426
EST:     GTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAG                         ATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTG
genomic: GTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGgttcacatga ... gtatcatcagATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTG
EST: gi|254334807|gb|GR844592.1|GR844592
EST:     GTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAG                         ATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTG
genomic: GTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGgttcacatga ... gtatcatcagATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTG
EST: gi|208081784|gb|GD884802.1|GD884802
EST:     GTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAG                         ATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGT
genomic: GTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGgttcacatga ... gtatcatcagATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGT