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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAgtaagacggtcttcttccaaactcgattatattgcattttatttttgtaggattcccagttttacaaataatttctaccttgtccatttgcatatatag

Basic information

species Glycine max
transcript GLYMA08G06190.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06190.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 9
TGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAgtaagacggtcttcttccaaactc--gattatattg--cattttatttttgtaggattcccagttttacaaataatttctaccttgtccatttgcatatatag-----------------------------
||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||| | ||||| || ||  | ||||| | |    | |   |||    ||| | ||     ||||   ||||      || ||| |||| ||      || |   |  |    ||||| ||   |                             
TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGgtaagtcagagaccctttgaacataggatcaaatcaaatatttccatttttccatttttccatttttcca------ttttggttaatttggttgcaaatgggggtttttgactgctgggatcccatgggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425600|gb|CA937120.1|CA937120
EST:     CCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGA                         GCTTTCAACAACAGTACTCAGAACATGTTAATACTACAAGAAAGCTGCATA
genomic: CCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAgtaagacggt ... gcatatatagGCTTTCAACAACAGTACTCAGAACATGTTAATACTACAAGAAAGCTGCATA