1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGGCTCTCACTATGCACCTGAAAAACAATGCTATGAGATGATCTAATTATAGCTGTTTTTTTTTTCAGGTACAAGCAGCATTATCTGCTTTAAAAGATGgtaagtctttgtatttctatcttcctgatggtaataaaattcacaaaatcttttttgttgacctatcttttggttattgtgaaaaatagaaacagtacac...
species | Glycine max |
transcript | GLYMA08G06010.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTACAAGCAGCA-AATCAAGCTTTAAAAGATG GGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTGEST: gi|192305328|gb|FG997566.1|FG997566
genomic: GTACAAGCAGCATTATC-TGCTTTAAAAGATGgtaagtcttt ... gcattaaaagGGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTG
EST: GTACAAGCAGCATTATCTGCTTTAAAAGATG GGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTGEST: gi|254315181|gb|GR830174.1|GR830174
genomic: GTACAAGCAGCATTATCTGCTTTAAAAGATGgtaagtcttt ... gcattaaaagGGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTG
EST: GCATTATCTGCTTTAAAAGATG GGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTG
genomic: GCATTATCTGCTTTAAAAGATGgtaagtcttt ... gcattaaaagGGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGCTCTCACTATGCACCTGAAAAACAATGCTATGAGATGATCTAATTATAGCTGTTTTTTTTTTCAGGTACAAGCAGCATTATCTGCTTTAAAAGATGgtaagtctttgtatttctatcttcctgatggtaataaaattcacaaaatcttttttgttgacctatcttttggttattgtgaaaaatagaaacagtacac
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaata