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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaagtgttggttaaacatttggttcaaacttgatgaaattgttctaatattggattgccaacttgcacattaaacagccctagtctttttctcttggag...

Basic information

species Glycine max
transcript GLYMA08G05700.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 9
---TCGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaag-tgttggttaaacatttg-gttcaaacttgat-----gaaattgttctaatattggattgccaacttgcacattaaacagccctagtctttttctcttggag
   | |||||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||   | ||||| |||||||| ||||| |||||| ||| ||||||  |  |||      | || | |  |     || | || |  ||||| | |  | || ||  ||   | |  |  ||||    | |    |     
GTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCAC---TCCAGAGGCAGCATGCTTCCTTGCCTAGgtaaggtgttggacactcatgcacactgaagcatagttaggggacactgattcaatatagcagggacatct--catcatgacaaatcctaaaaatataggat-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400964|gb|EV270778.1|EV270778
EST:     GGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAG                         AGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAA-CAATGATTCTGA
genomic: GGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGgcaagtgttg ... ttttttgcagAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACAATGATTCTGA