Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGTTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtatttttttgttcttggatattaatcttagatttctaattgataattataatcttagctaattgttgcaatggttgttatctgtcag
Basic information
species | Glycine max |
transcript | GLYMA08G05100.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g14080.1 (Oryza sativa), 5'ss of exon 9
AGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGTTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgt-tagtatttttttgttcttggatattaatcttagatttctaattgataattataatcttagctaattgttgcaatggttgttatctgtcag
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TGGTTTTCTTTATGATATGTTGCAGAAGGAGGTAATTTCTTTGAGAAAGGCATGCCATGAAAAAGATCAGAGTCTAAAAGATAAAGATGATGCGATTGAGgtatggaaatattttg--cttatttgttgcactgagttc----ataggaagct-cgatattagaaaatttacctgtttcttcttgtcctacag
upper sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g50320.1 (Oryza sativa), 5'ss of exon 9
AGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGTTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgt-tagtattttt-ttgttcttggatattaatcttagatttctaat--tgataattataatcttagctaattgttgcaatggttgttatctgtcag
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TGGTGTACTCTATGACATGCTGCAAAAGGAGGTCATTTCATTGAGAAAGGCATGCCATGAGAAAGATCAAAGTCTAAAAGACAAGGATGATGCAATTGAGgtatggcactagaattcctgtttattatggatttaatgggaccaatgctgtgggtcatg-cctttgctaactgcctc-----ttgtttacag----
upper sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 9
AGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGTTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtatttttttgttcttggatattaatcttagatttctaattgataattataatcttagctaattgttgcaatggttgttatctgtcag
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AGGGGTGTTATATGATATGCTGCAAAAAGAGGTCGTTTCTTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTCAAAGATAAGGATGATGCTATTGAGgttggtattcttgtcctc------atctgtcttatgatgct--ttaat--tcatatttttgctcatgtatttggatg-taattctttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207837165|gb|GD808810.1|GD808810EST: TTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAA ATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
genomic: TTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtattt ... tatctgtcagATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGTTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAgttagtatttttttgttcttggatattaatcttagatttctaattgataattataatcttagctaattgttgcaatggttgttatctgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG