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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttattatgtcacattccttgaatcttttctatgtagactttcttttgatctttgaatcttgtctttgattttactgcacag...

Basic information

species Glycine max
transcript GLYMA08G04580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 16
CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttattatgtcacattccttgaatcttttctatgtagactttcttttgatctttgaatcttgtctttgattttactgcacag
|| || || || |||||||| || ||  | ||| ||  ||||||  | |||||||||||||| ||||||||||| ||||| ||||| ||||  ||||| ||| ||     | || ||        ||     ||  || |||| |    ||  | | |||||    | |||   ||||  | | |||||| ||  |||||
CTCTCAGCTCTAGGAGATGTGATATTCTCTCTTGCTTCAAAAAGTTCTCATGTACCATACAGGAACAGCAAACTAACTCAGCTTCTCCAAAGCTCTCTAGgttaactccaaatcttc--------tgctctgttttttcaatcgtg---atcgaaattttct----aactt---atctc-tgtgtgatttaacatcacag

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 16
CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttattatg-tcacattccttgaatcttttctatgtagactttcttttgatctttgaatcttgtctttgattttactgcacag
|| ||  | ||||||||||| || ||  | ||  ||  ||| ||  | ||||||||||||||||||||||| || || || ||||| ||||| ||||||||| | |       | | || ||| ||   ||||||| | ||||      |||    |||||  |||   || ||     || |||  |             
CTCTCATCTCTTGGAGATGTGATATTCTCTCTCGCTTCAAAGAGTTCTCATGTACCATACAGAAACAGCAAGCTAACACAGCTTCTCCAAACCTCTCTTGgttagt----gaactttatatatgataaccacattcat-gaataagaaatatcataacttttgttt---ctatgtgatgtggcttatag------------

upper sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 17
CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttattat----gtcacattccttga---atctt----ttctatgtagact---------ttcttttgatctttg-aatcttgtctttgattttactgcacag------------------------------
||||||||||||||||||||||| ||||| ||| | || || ||| | ||||||||||||||||||||||| ||||||||| | || || | |||||||||||  ||  | ||   || ||  | |       | || |||| |    ||||    ||   |   ||||         ||| || | ||     | || | | |||||  ||  |  |  |                              
CTATCTGCCCTTGGAGATGTTATCTTTGCTCTTGCCCAGAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAAGTCCTTCAGAGTTCTCTTGgtacttcactgttttccagttgcttttagcaataaatcccttcacctgtcttattgtttcgtcaggactctaaattatttccttagctcccaatagtcctctttttgaacttcatatagcggatttttattttctactttataaactacag