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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACCAGGCACAGCTTAATCGAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaatacatctcaaatgaaaattttatttgtaaattacaatggaaattttttttaaatttttttttggtaactatctttactgaacttaatgttttttcag

Basic information

species Glycine max
transcript GLYMA08G03580.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812744|gb|BI785019.1|BI785019
EST:     GAGCCAAACAGGCTACCAAATTTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|5605747|gb|AI899811.1|AI899811
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|21675780|gb|BQ628131.1|BQ628131
EST:     GCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|213599745|gb|DB975810.1|DB975810
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAAGAAAT-CCATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAA-TTTTGACATATGGTGAGAG
EST: gi|20814409|gb|BQ298887.1|BQ298887
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|13180739|gb|BG352079.1|BG352079
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|254330475|gb|GR841740.1|GR841740
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|21638801|gb|BM139847.1|BM139847
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAACTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|254325529|gb|GR838410.1|GR838410
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
EST: gi|8826321|gb|BE210051.1|BE210051
EST:     GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGA                         ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG
genomic: GAGCCAAACAGGCTACCAAATCTGCAATTTTGATGAATTTGGAATCAAGAgtaagtaaat ... gttttttcagATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG