Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcaaccaatgacatattatgttaataaattattttctcgatgtaattatatggatgcatggtgcag

Basic information

species Glycine max
transcript GLYMA08G03570.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 7
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatca-gattaatca-ttagcatcctgtacttcaaccaatgacatattatgttaataaattattttctcgatgtaattatatggatgcatggtgcag
|| || |||||||||||  | || || ||||| || |||||||||||||| ||||  || |||||||| |||||||| ||| | ||||| ||  ||||||||| ||  ||      ||     |||| | |||| || |  | ||  ||     ||| ||||   |  || || |    |  |  |||| || | |  |                      
GCGGTGGAGGAGGCTCAGAGGGCCATCAATGCTGCTCATGTTGAGGCTGAGAGTGCAGAGAATGGCATTGGTGTTGTGAAACTAATGGGGCGCAACAGTGgtatgtacctc-----cccaatatgattatgatttatgaacttgcccccacatattctaccagaaa-gtactaaggagctttaaaatttact-gctacag---------------------

upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcaaccaatgacatat-tatgttaataaattattttctcgatgtaattatatggatgcatggtgcag
|| || ||||||||||||||||| |||||||| || ||||| ||||||| ||||| ||| ||||| |||||| |||| ||  | ||||| ||| ||||||||||| ||||   |          ||  | ||||     ||  || |  ||  |    |||  | || | |   ||||| || ||  |  |   | |   | |    ||           
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttctacgaga-----ggcgaataaatta--tgctaatatacgatatct--gtcaaatatatgtgtcaattaattaactaactcttgagtatttctctgctaat-----------

upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcat-tagcatcctgtacttcaaccaatgacatattatgttaataaattattttctcgatgtaattatatggatgcatggtgcag
|| |||||||||||||||||||| |||||||| || ||||| || |||| ||||| ||| ||||| |||||| | || ||  | ||||||||| ||||||||||| ||||   |     | |   ||  |  || | |  ||  || ||  |   |   ||||   || |   || ||  || ||  |  | | | |   | |                 
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagagaccaat--atgtggctagtaacatatgatacttgatgcctgtcaattgtatgt---gtcaactaactaactcttgggtatgtatctgc---------------

upper sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAGGTGTTGTTAAATTGATGGGCCGGTACAGTGgtaagtttcttgaatgcctccactgatcagattaatcattagcatcctgtacttcaaccaatgacatattatgttaataaattattttctcgatgtaattatatggatgcatggtgcag
|||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |||||||| || || ||||| || ||||| ||||||||||    ||| ||  | ||  || ||   ||||  || ||   |  || ||    |    | | |||| || |  |  | |  ||  ||  | |  ||||| |          
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttc----atgtctttattgtccatat-gttcatctgcctcacttcttttaa--ggtagtct-tcatgtcaacagctcttctattc--tgagaatgcatggagga---------