Sequence
atgc intronic sequence ATGC exonic sequenceTTCACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACTGCCCTGCATGAGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCAACTGAGgtttgttttttatgtcctaattgtagaacctgtgataaatcatttaaagccattggttgtttattattcatttttgttcaattttttgatcgtgtcttga...
Basic information
species | Glycine max |
transcript | GLYMA08G01730.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 8
TTCACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACTGCCCTGCATGAGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCAACTGAGgtttgttttttatgtcctaattgtagaacctgtgataaatcatttaaagccattggttgtttattattcatttttgttcaattttttgatcgtgtcttga-----------------
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TTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTCTTGAAAAGCTTAGCTATAAAGATGACGAGGGTGCAGCAACAGAGgtttctttctta-atcacaattgtctcat-tgtg-tatttgggattgggctacc--ttgtttcttattgtaatctgattactttttccgcctgcttttttctgtgcaaaaatttcag
upper sequence: GLYMA08G01730.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 10
TTCACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACTGCCCTGCATGAGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCAACTGAGgtttgttttttatgtcctaattgtagaacctgtgataaatcatttaaagccattggttgtttattattcattt--ttgttcaattttttgatcgtgtcttga
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ATCACCCCTGGGTGAAGCTTGTTTAAGAATGGATTTGACTGCCATTCACGAGATTTTAGAAAAGCTTGGGTATAAAGATGATGAGGGAGCAACAACTGAGgtttgtttctgacatgtcaaa-gtaaaaaaattagttgatgatcttatagcattcagggtttagttttcatctcattgattgttactgtaatcatatttta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192299191|gb|FG992907.1|FG992907EST: AGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCAACTGAG CTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACATTGAACTCAAAG
genomic: AGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCAACTGAGgtttgttttt ... tatcaagcagCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACATTGAACTCAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACTGCCCTGCATGAGGTGATGGAGAAAATTGGGTATAAAGATGACGAGGGTGCAGCAACTGAGgtttgttttttatgtcctaattgtagaacctgtgataaatcatttaaagccattggttgtttattattcatttttgttcaattttttgatcgtgtcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG