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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGCTGTTAGGATATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTgtaagtcacaattcttcgctcgtctacatatatccttttgtgtttcagtaccttaaatcattatgaaatcatggttacag

Basic information

species Glycine max
transcript GLYMA08G01640.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01640.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G63430.2 (Arabidopsis thaliana), 5'ss of exon 10
---GGAAAGCTGTTAGGATATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTgtaagtcacaatt-cttc---gctcgtctacatatatccttttgtgtttcag-taccttaaatcattatg--aaat-catggttacag
   |  ||  |  | |||||||| | ||||| |   ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || |||    ||||  | || | ||   |||    | |||  ||||| |  ||||| || ||  | | ||  |||||  ||||   | | | |||
ACAGCGAAATTACTTGGATATTGCAAAGAGATCTCACCATTTACAAGAATGCTTGTTTTTGAGTATGCATCAAACGGAACACTATATGAGCACCTTCACTgtaaatagtctaacttacctcagagctttgttgcat-catcctgtattgttttagctagataacatttttatgtgaaatattttgatgcag

upper sequence: GLYMA08G01640.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 10
---GGAAAGCTGTTAGGATATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTgtaagtcacaattcttcgctcgtctacatatatccttt--tgtgtttcagtaccttaaatcattatgaaatcat--ggttacag
   |||||  |  | || |||||| ||||||||  |||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||| |||||   |||||     |||||  ||     |  | | | | |   |||| |||||||  | ||||        | ||||     |||||
ACAGGAAAATTACTGGGCTATTGTCGAGAGAGCTCTCCATTTACAAGAATGCTGGTTTTTGAATATGCATCGAATGGAACGCTCTATGAGCACCTTCATTg---taagttgagcttcttttctgtaacagctgtttgcatcaatgtgcttcagtagatgaaatttgagcctattcatttaaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203287|gb|BE329511.1|BE329511
EST:     GGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTT                         ATGAAGAAGGGTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAG
genomic: GGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTgtaagtcaca ... atggttacagATGAAGAAGGGTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAG