Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtag
Basic information
species | Glycine max |
transcript | GLYMA07G40050.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 8
GTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtag
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GTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGgtacttacataattgcggtttttatgttcaagcatatc---aatcctttttcatt-tttatgtacctatcttctggaaatttgcag--------------------
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
GTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtag
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GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgtattatgtcattctggaggccttgtggttagatttt---aaagcgag--gcattgcaattggcgtctttatgaaaat--tttaccatattgtttattatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18734457|gb|BM528196.1|BM528196EST: ACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCA GGTGACAAAAATGTCATAAAATTTGACGGTGATCACAACTCGTCTCGACCA
genomic: ACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatct ... atttttgtagGGTGACAAAAATGTCATAAAATTTGACGGTGATCACAACTCGTCTCGACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC