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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCTGTTATGGTTTCCGGAACCTGCAGAACATTGTACGAAAACTTAAAAATGGGAAATGTGATTATCATTTCCTAGAAATTATGGCATGCCCTTCAGgtaccgtgtttttccttcatcataaattttatttatttgttggtttttgtttgttatcaatattttttcacgaggcccataaaattggtaggtattgaactgaaagagaatgttcattggtgcag

Basic information

species Glycine max
transcript GLYMA07G39690.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39690.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 9
GCTCTCTGTTATGGTTTCCGGAACCTGCAGAACATTGTACGAAAACTTAAAAATGGGAAATGTGATTATCATTTCCTAGAAATTATGGCATGCCCTTCAGgtaccgtgtttttccttcatcataaattttatttatttgttggtttttgtttgttatcaatattttttcacgaggcccataaaattgg--taggtattgaactg----aaagagaatgttcattggtgcag--
||  | || ||||| ||||| ||||||||||| |||||  ||||| | || | ||| ||||||||||| || || || ||  | |||||||||||||||||||   |  |||| |||   ||   | ||| | | |||||||  ||  | ||   ||    |    |||| |   |   | ||||     |     ||||| ||    |||  | || |   ||| |  |   
GCATTATGCTATGGCTTCCGCAACCTGCAGAATATTGTGAGAAAAATCAAGATTGGAAAATGTGATTACCACTTTCTGGAGGTCATGGCATGCCCTTCAGgtattttcatttttctttccca---actttctat-tttgttgagttgggatttgaattcccaaacattcaggcttctgtttaaatcaacttgaactttgaaatgggtaaaactggatatattttgatcaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796277|gb|AW781674.1|AW781674
EST:     AAATGGGAAATGTGATTATCATTTGCTAGAAATTATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTC
genomic: AAATGGGAAATGTGATTATCATTTCCTAGAAATTATGGCATGCCCTTCAGgtaccgtgtt ... attggtgcagGTTGCTTAAATGGGGGAGGTC
EST: gi|151400391|gb|EV270205.1|EV270205
EST:     ATCATTTCCTAGAAATTATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATTAAACCAAATTCAGGGCAATCTCCTA
genomic: ATCATTTCCTAGAAATTATGGCATGCCCTTCAGgtaccgtgtt ... attggtgcagGTTGCTTAAATGGGGGAGGTCAAATTAAACCAAATTCAGGGCAATCTCCTA
EST: gi|13181297|gb|BG352637.1|BG352637
EST:     ATCATTTCCTAGAAATTATGGCATGCCCTTCAG                         GTTGCTTAAATGGGGGAGGTCAAATTAAACCAAATTCAGGGCAATCTCCTA
genomic: ATCATTTCCTAGAAATTATGGCATGCCCTTCAGgtaccgtgtt ... attggtgcagGTTGCTTAAATGGGGGAGGTCAAATTAAACCAAATTCAGGGCAATCTCCTA