Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttag

Basic information

species Glycine max
transcript GLYMA07G39240.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 8
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgag--taccatt--tgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttag
||||||  | || |||||||||||||||||| | |||||  | ||||||||||||||||   ||||||||||||| || |||||||| |||||| |||| || ||  ||   ||  | ||  |  | ||     || |      |  || | ||   ||| | |  |  ||     |||| |   |    | || || || ||               
GATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGgtaagaatattgttaatatatatgatacttgatacagaacgcaatgaatcatata--tgcttttttttttgct---gtatatgcaactcttttgcttcttccag--------------

upper sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 9
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgatcatgagtgggtatgtttgaaagatctgattttttcacttgacaccttttag
|||||||||||| ||||||||| |||||||| | |||||  | |||||||||||||| |   | || || || || || |||||||| ||||||||||| || |||     ||   ||| |     |    | | | ||  | |  ||     |||         || |    |   ||||    | |  |||  | | | |  | ||||  ||
GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGgttagtgt-gcttaatattggactagctaataaaatctg--tgacaagtcatatgc---------tgtgcaaattattttggcttacc--attcatcccccttgcgccttgcag

upper sequence: GLYMA07G39240.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 9
GATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtaccatttgtaatttgttctccccgcatattttggtttattagattcttgcctatgat-catgagtg----ggtatgtttgaaagatctgattttttcacttgacaccttttag--------------------------------------------------------------------------------
|||||| ||||| ||||||||  | |||||| | ||||| |||||||||||||| |||||| |||||||  |||||||  ||||||| ||||| || || ||||  || || | |   || |  |       || |||  ||| | |   ||  |  ||     ||||  ||       |||||  | |  |  | |||  | ||| |  |  | |||                                                                                 
GATAAATCATGCCATTGGAGCCACCGGAGTTGTTAGCCAGGAATGCAAGACTGTAGTTGCACAGTATGGGGAAACAATCATGGATTTACTTTTATCAGAGgtgaacactatctttttattatctttt--atctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacat-tacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactgactacatcttttggattttgtattttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015932|gb|CX702674.1|CX702674
EST:     CTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAA                         ACACAGCCGAAGAAGATCTGTTCCCGAATTGGATTGTGTGCTTTTGATGGG
genomic: CTGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGTCTGAAgtgagtacca ... caccttttagACACAGCCGAAGAAGATCTGTTCCCGAATTGGATTGTGTGCTTTTGATGGG