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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTTGGATTGGCTCTGACTATGCATCGTAGGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAGAAgtaacaaaacctgtattttattttcttaagttatagtttatatccacttgctagtgtaactgtcttaccacag

Basic information

species Glycine max
transcript GLYMA07G39070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0116g01710.t01 (Vitis vinifera), 5'ss of exon 8
CAACACTTGGATTGGCTCTGACTATGCATCGTAGGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAGAAgtaacaaaacc--tgtatttt---attttcttaagtt------atagtttatatccacttgctag-tgtaactgtcttaccacag
 |||||||| | || || || ||    ||||   | |||||||||||||||| || |||||||| || |||||||||||||||||||||||| || |       |||||   ||  ||| | | |      ||   ||||||     | |||  | | | | |  |   ||||
GAACACTTGCAATGACTTTGGCTCAATATCGGTTGCAACCTCGGGTGTATATAGGCTGCATGAAGTCGGGTCCTGTCCTTGCTCAGAAgtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacag