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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACCTTGGTGAGCATGATGCCTGCACAACCATTTGTATTTCGCAATTATCAGgttcgaagctaatactgtttattggtatttgtaaataatggctattaaattacatttattcatgattgttaatgtattttttctttataatatttaattctctgtcactctttgtcgttactatctataatgcag

Basic information

species Glycine max
transcript GLYMA07G38890.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 10
AATGATAGATTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACCTTGGTGAGCATGATGCCTGCACAACCATTTGTATTTCGCAATTATCAGgttcgaagctaatactgtttattggtatttgtaaataatggctattaaattacatttattcatgattgttaatgtattttt-tctttataatatttaattctctgtcactctttgtcgttactatctataatgcag
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ACTAATAGAATCAGCTGTGAAGAATGTTCCAAAAGTATTTGTTGTATCTACTCTTGTTAGTGTGATGCCTGCGCAACCATTTATATTTCGGAACTACCAGgtacaacacttctctttttacttttggttaattctttattctctgttaattgcgtatgaa-gtttttaccactttaaatttgtctgtctattcttcttgtgtgtatcatgttctctcttttctatttgcag-----