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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcattaggcatgtacaagatagctactaatgatactacttaactgattttaatttccctgccgcag

Basic information

species Glycine max
transcript GLYMA07G38160.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 9
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttca--acacattc-attaggcatgtacaagat--agctactaatgatactacttaa------ctgattttaatttccctgccgcag---
|  |   ||| || | |||||| || || |||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| |||||  | | | |  |||   || |||| | |    |   |  || |  || |  ||   | ||||   ||      ||| |||   ||  |||  | |     
TGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAgtaaattataattctcattccatattctactgtttaatgattagcttcagttcgtagaaaaactaaacaaaacttactggtttgttttgtcctttcacctcag

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgt--------gaaattcttcaacacattcattaggc-atgtacaagatagctact-aatgatactacttaactgatttt--aatttccctgccgcag-----------------------------
|  ||  ||| ||||  ||||| || || |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || || ||||||||||| ||        |   |  |||| || | | ||||  | || | ||   |    |||  |||||   |  ||  |  ||    || ||   |  | ||                              
TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaacttattattccattttcatttttttaacttgatgatttcaaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctatag

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 7
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcattaggcatgtacaagat--agctactaat--gatact-acttaactgattttaa-----tttccctgccgcag
|  |   | | |||| |||||| || || |||||||||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| |||||||||||  |     |  |||     |||  |||  ||||    | |     || |||    || || ||| || |  ||||       ||||  |  |  ||
TGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattccttgtcatttt-ttcgctagtaatgtttctgttctgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttag

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 10
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcattaggcatgtacaagatagctactaatgatactactta--------actgattttaa-tttccctgccgcag
| ||     | ||||  ||||| ||||| |||||||| || || || ||||| || ||||| ||||||||||||||||| ||||| || || || |||||||| ||    |       ||  ||   |||  |     | | |   ||||  | | | ||  ||         ||||||||   ||||| ||  ||||
TGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCAAgtatgtcttttctggattcagtttttctagcaaaaattatggttcttacttcttacattatgtatactaattgctgattttctctttccatgttgcag

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 10
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattct-tcaacacattcattaggca-----tgtacaagatagctactaatgatactacttaactgattttaatttccctgccgcag
||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || ||||| ||    || | |   | || | |||||  |     | ||| |  | | |     ||||   ||| ||||| | |   ||| | || || ||
TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttctttttcttctcccaataattagaaaataactctactaatttgttgtgcttgat-tgactaaactg-tatacgttttcttggcgtag

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 10
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcattaggcatgtacaagatagctactaatgatactacttaactgat--tttaatttccctgccgcag-----------------------------
| || | ||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| || || || | ||  |  |  | ||   |  | ||    | || |     ||  | |  || || |  || || |    ||  || |                             
TGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCAAgtatgttaa-ttatccaggaagtgaagtattgaaattcatt-catcttcattccattttgccaaaatgttgattaaactgtgatgttgctgatgttacagttcttaccaaatgtttgcag