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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttcttcag

Basic information

species Glycine max
transcript GLYMA07G38020.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38020.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
CCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttct-tcag
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TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgt---------ttgtagagcaa--------------ccattcttctggagtttattgtcaaacaactttatttct--ataatgatgaaaacttacatcttcattagttgattt-tgatatgtggatttttgtctcag