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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGCCATTGGTGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtagaatatcacttttatctgcaactcattaagaactgccaacaatttggagtatatcattttcttgtgaatgatcattctgtatttgtgtggtcaagag...

Basic information

species Glycine max
transcript GLYMA07G36840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36840.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G06650.1 (Arabidopsis thaliana), 5'ss of exon 8
GAATTGCCATTGGTGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtagaatatc----actttta----tctgcaactcattaagaactgccaaca-atttggagtatatcattttcttgtgaatgatcattctgtatttgtgtggtcaagag---------------------------------------------------------------------------
| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||||| |  |||||||||||||||| ||||||||| | | |     |||||||    | ||   |||| |  ||  | |  |            || |  | | ||  | ||  || |    |   |  |||  | |   |                                                                           
GCATTGCTATTGGTGGGGATGTGTTCCCGGGCTCAACTTTATCTGACCATATCCTGCGGTTTAACAACATCCCACAGgtatattcttcttgacttttaaaattttgttgctcactgggatatcctcatgcggcctatccattttttctactgtttaaccatgagaaagctatactgtacttagaggcatctgaccttccctctcttgttcagctagcctctttaactccaaaattttgttttcattttttcaatattgcag

upper sequence: GLYMA07G36840.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0077g00950.t01 (Vitis vinifera), 5'ss of exon 8
GAATTGCCATTGGTGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtagaatatcacttttatctgcaactcattaagaac---tgccaacaatttggagtatatcattttcttgtgaatgatcattctgtatttgtgtggtcaagag
| ||||| ||||| |||||||| |||||||| || || |||||||| ||||||||||||||||||||||| |||||||||   ||    ||  |       | | | | | ||   |||||| || ||| | | |     ||| || |   |  ||  ||   | |||    |  |  | 
GTATTGCAATTGGAGGAGATGTGTTCCCAGGATCTACTCTTTCTGATCATGTTTTGCGGTTTAACAACATCCCACAGgtattctagtgtttgcagtcattccccctgaggcacacctgccaaaaagttgcattttgcatgtttattttt--ttttccctccccacttggaaagctatta-

upper sequence: GLYMA07G36840.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 7
-----------------------GAATTGCCATTGGTGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtagaatatcacttttatctgcaactcat-taagaactgc--caacaatttggagtata--tcattttcttgtgaatgatcattctgtatttgtgtggtcaagag
                       | |||||||||||||| ||||| |  || || || || ||||| || ||||||||||| || |||||||| |||||||||      |  || |  |||| | |  | | |   ||    ||  |    ||||   |  | |||   | |||||||    |||| | ||||  |  ||   | 
TGTTACTGACGGCCTCTACGAAGGCATTGCCATTGGTGGTGATGTCTATCCTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgtat----ccgtttctgactgcgaattgtatgatcgctcatgcaggatccaggagccaagtttattacatcgtgaatgtaatttctat-tttgaatattctttat

upper sequence: GLYMA07G36840.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S35_384V6.2 (Physcomitrella patens), 5'ss of exon 7
-----------------------GAATTGCCATTGGTGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtagaatat-cacttttatctgcaactcattaagaactgccaacaatttggag------tatatcattt----tcttgtgaatgat-cattctg-tatttgtgtggtcaagag
                       | || ||||||||||||||||| | ||| || ||||| ||||| || ||||| ||||||||||||||||| ||||||||||||| | |  |||||  || |  || |   |||      |  | |   |        | |||| ||    | | |    | || || | || |||||  |  ||  ||  
TGTTACAGATGGTCTATATGAAGGCATCGCCATTGGTGGAGATGTCTACCCTGGGTCCACGCTTTCAGATCATGTGTTGCGGTTTAACAACATTCCACAGgtagaatctgcttttttaagtgtagttc-tgctgaatcatgcatgagtgaaatactctccacatcaattcaactttggcatgtaatgcaatatgatattttgggtgtgcag--