1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCTGCTTGTTGATATGTCTTCACTGTTATATGATCATCGGTTACAGGATGCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACAgtaagttaccctgtattttaaaacgtctccatatatatatatgtgtgtgttgtcaaaatgggaaaaagtttacattctagcaaactgatatttttccccatgatactgttctagtagctatttacaatgttgtgaattgcag
species | Glycine max |
transcript | GLYMA07G36720.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACA ATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAAEST: gi|254346702|gb|GR856424.1|GR856424
genomic: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACAgtaagttacc ... tgaattgcagATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAA
EST: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACA ATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAAEST: gi|7284520|gb|AW597109.1|AW597109
genomic: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACAgtaagttacc ... tgaattgcagATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAA
EST: GCCTACTTGAACAGTCCAGATATTCTGCAGAGCACCATGTTCACCGAACA ATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTCGCAAEST: gi|51337572|gb|CO981438.1|CO981438
genomic: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACAgtaagttacc ... tgaattgcagATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAA
EST: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACA ATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAA
genomic: GCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACAgtaagttacc ... tgaattgcagATATGTTGATCATGTCTTGACCAGTGAGAGGGATAATATGAGATGTTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTTGTTGATATGTCTTCACTGTTATATGATCATCGGTTACAGGATGCCTACTTGAACAGTTCAGATATTCTGCAGAGCACCATGTTCACCGAACAgtaagttaccctgtattttaaaacgtctccatatatatatatgtgtgtgttgtcaaaatgggaaaaagtttacattctagcaaactgatatttttccccatgatactgttctagtagctatttacaatgttgtgaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA