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AATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAGgttatttttttaagcttcattagcaaagttactcctatttgtataaatcataataagatctgaatatattatttattgtcagtttggttaaaaaaaaaca...
species | Glycine max |
transcript | GLYMA07G36610.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAG AGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGATEST: gi|151408720|gb|EV278528.1|EV278528
genomic: CAGCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAGgttatttttt ... ttgtttctagAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGAT
EST: GCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAG AGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGATEST: gi|31467576|gb|CD409604.1|CD409604
genomic: GCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAGgttatttttt ... ttgtttctagAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGAT
EST: AATATAAATTACATCAG AGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGAT
genomic: AATATAAATTACATCAGgttatttttt ... ttgtttctagAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTACATGCTTTCAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGAAGCAGTTACAGGGGAAAAGCTGACTTCATTTTTGAACAATAATGCAGCTTATTTAGAAGTTGTAAAAGTTGCAAAGCAATATAAATTACATCAGgttatttttttaagcttcattagcaaagttactcctatttgtataaatcataataagatctgaatatattatttattgtcagtttggttaaaaaaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaaa