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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaag

Basic information

species Glycine max
transcript GLYMA07G36550.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 5'ss of exon 9
CAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaag
 ||| |  ||||  |||| ||||||||||||||||| || || || || |||||||||||||||||  | || ||||||||||||||||| |||||||||||| |||||        |||  |  |  |      |     ||    ||  |  | |  | ||| |  ||   | ||  |||  ||   | | || |  |                                                                              
TAAACCTGATCTCCCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATTTATGCTTATTACCATCCAACTgtatgtttcctgccaactgtgctatacttttacatagtgt-tcagttatagatgttctatttctttagttttatcaaatttcataaatcgcataaaagttg-----------------------------------------------------------------------------

upper sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G020721_T01 (Zea mays), 5'ss of exon 9
CAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccat--tctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaag
 ||| || ||||| | || |||||||| ||||| ||||| || || || ||||||||||| |||||  | || ||||| ||||| ||||| |||||||||||| |||| | |   ||| ||||| |    |||    |   |      ||||||| |||   | |  ||   |     | ||  |       || | | |     | || | | |   | ||  |    |    | || | |                                      
TAAACCAGATCTTCCCCGGTTGCATGAATGGCAATTTCGATCTGGACTGGATCGCTACATTTGGATCGTGGGGATGATATATGCATATTACCATCCAACTgtatgtttttgaccatatattttttattgtagttgttctgtttc----tttagattcatagaccccttggaggcaaccacatgattgtttcaaagagcgtaaggaagttgtattttggcattgatgaaatatcctgtctcag--------------------------------------

upper sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 5'ss of exon 9
CAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaag
 ||| | || ||| | | |||||||||||||||||| || || || |||||||| |||||||||||||| || ||| | ||||| || || || ||||||||||||| |  ||  ||    ||   |  || |      |  | ||   |||| ||  |              | |||| |      | |    |  ||  |||||  ||| || |                                                              
AAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGCATACTACCACCCAACTgtaagttcccaatactagaacttcacatcaactctgttca--caaatggttagctcagt------------gataaagactt----accgtttcatttccttgatta-tgtatcttatag----------------------------------------------------------

upper sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 9
CAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaag
 |||  | |  |||| || ||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||      |    |||||   |   |   |  | | | |  |  | |   |||   | |   |   || |||| | |        |        | ||    | |   |  |  | | |                                                    
AAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTgtaagcttcca----tgcccttttgccttgttttccaatattttcaagtaca-acttatttcttttatctacatggagatacagtccttatgaggtgatattaataatgggcatttgttgatgtag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193660971|gb|FK602163.1|FK602163
EST:     ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT                         GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: gi|193513713|gb|FK467327.1|FK467327
EST:     ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT                         GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: gi|17519074|gb|BM188116.1|BM188116
EST:     ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT                         GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: gi|193516378|gb|FK476412.1|FK476412
EST:     ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT                         GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: gi|193726520|gb|FK656180.1|FK656180
EST:     ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT                         GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA