Sequence
atgc intronic sequence ATGC exonic sequenceGACCCTCATTGTCTGCTGCCGAAGAATATTCTCTACACTCTAGATACCTGTCTAAAGCAAATTCCTTAAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatccacctatttcatcattgttatgcatgcatgctcagagttttagtattatttgtggggatttatttgtagtttttgttaggatgattgaatc...
Basic information
species | Glycine max |
transcript | GLYMA07G35280.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G35280.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g30750.1 (Oryza sativa), 5'ss of exon 8
GACCCTCATTGTCTGCTGCCGAAGAATATTCTCTACACTCTAGATACCTGTCTAAAGCAAATTCCTTAAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatccacct---------atttcatcattgttatgcatgcatgctcagagttttagtattatttgtggggatttatttgtagtttttgttaggatgattgaatc---------------
| || ||||| || || || || |||||||| || || || |||||||| ||||||||||||| | |||||||| || ||||| ||||||||||| |||| || | | |||| | ||||| | | | || | | | | || | || | | ||| || |||| | || |
GCCCTTCATTATCCGCCGCAGAGGAATATTCACTTCATTCAAGATACCTTGCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAATgtatgtgtttttttttcattttaatttaagttttgtttttcttttg-actaatgatactttttttttctgccagtgtggtgttgcgccttgccttagtctaatgccctttattggttattgcag
upper sequence: GLYMA07G35280.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 8
GACCCTCATTGTCTGCTGCCGAAGAATATTCTCTACACTCTAGATACCTGTCTAAAGCAAATTCCTTAAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatccacctatttcatc----attgttatgcatgcatgctcagagttttagtattatttgtggggatttatttgtagtttttgttaggatgattgaatc--
|||| |||| |||||||| |||||||| ||||| || ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| || | || | | | |||| | | || | | || | | ||||| |||| |||| ||||| | | | ||| |
GACCTCCATTATCTGCTGCTGAAGAATACTCTCTTCATTCTAGATACCTTAGTAAAGCAAATTCTCTTAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagcattttgtttttccttgtttgactgttttatttttatcttttggtttacatttttatta--taaattttaattgt----tttgtcaagttaattaataaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22523658|gb|BU082469.1|BU082469EST: AAATTCCTTAAATCTTTCTGAAATTGCAGAAATGAAAATTGT CTATCGTGGTGGGGTAGACAGTGAGGGGCATCCTGTCATGGTTGTTGTAGG
genomic: AAATTCCTTAAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatcc ... tgtttttcagCTATCGTGGTGGGGTAGACAGTGAGGGGCATCCTGTCATGGTTGTTGTAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACCCTCATTGTCTGCTGCCGAAGAATATTCTCTACACTCTAGATACCTGTCTAAAGCAAATTCCTTAAATCTTTCTGAAATTGCAGAAATGAAAATTGTgtaagtatccacctatttcatcattgttatgcatgcatgctcagagttttagtattatttgtggggatttatttgtagtttttgttaggatgattgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggga