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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagattgtactttataatgtgcataagctctgcttcaaaaaactgtaagaaatctaatcatcttgatttcttctgcttacag

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g38590.1 (Oryza sativa), 5'ss of exon 9
GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaat---agattgtactttataatgtgcataagctctgc--------ttcaaaaaactgtaagaaatct-----aatcatcttgatttcttctgcttacag------
|||||| |||||| ||||||||||||||||||||||||| ||  |||| | |   |  |   |||  | |||       || | ||         |        || |     || |     ||  ||||    |  || || | |||       
GAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGgtgagttccatttatcactacagaattactgatagttttgtacattgtttctttgttcctattgaggatttggggcaagaatctcacatgtttgtgttgacacaaacag

upper sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 8
GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagattgtactttataatgtgcataagctctgcttcaaaaaactgtaagaaatctaatcatcttgatttcttctgcttacag-----------------------------------------------
|| ||| ||||||||||| |||||||||||||||||||||||  ||||||        ||| || |  |     ||||    | |  ||  | ||   | ||   ||||  | |      ||  || || ||                                                
GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaag--acccttaccttctggtaactgtaag----gttaaaatgatctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcag

upper sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 8
GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaa-tagattgtactttataatgtgcat---aagctctgcttcaaaa-aactgtaagaaatctaatcatcttgatttcttctgcttacag--------------------------
 | ||| ||||||||||| ||||| |||||||| |||||||| |||||||| ||   |  |||  |   | | ||     | ||  || | |||  |  ||    ||   | | ||  || || | | || | ||                             
AACTGAGAGTGCTTTGAAGTTTGGGTGGTTTTTTCTGTTTTACCTGgtaaaataatctaaactaaaggtttttcagtcatatcttagcattaaattagatgagccaagcatgaacaaattcatctgtacttcatagctaactaacaatctttgtccatttccag

upper sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G169773_T02 (Zea mays), 5'ss of exon 8
GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagattgt-actttataatgtgcataagctctgcttcaaaaaactgtaagaaatctaatcatcttgatttcttctgcttacag
|| ||||||||||||||| ||||| ||||||||| ||||||| || ||||    ||  | |||| |||   |  | ||  | |  ||||     ||    |    ||||| ||||| |   ||||         
GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattatcatcacttcatatattagaaaaaatatatttca-----ctccctg----ctaatgatctttaccccttccag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315267|gb|GR830260.1|GR830260
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|10255230|gb|BE822996.1|BE822996
EST:     NAATGNNNNTGCTTTGAAATTTNNNTGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|23728768|gb|BU762445.1|BU762445
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTGTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|13311994|gb|BG405645.1|BG405645
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTNTTCCTGTTTTATCTG                         CTTCACATAAGATTCTGCATCTTAACTGCAGTTGCTCCTCCTATTAGTTTT
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTAT-AGTTTT