Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTACTTGAGTTTTAAAGACTGgtaagttcatagctactatgctttattgacgtaagttatccatatttcgatcttgccattcctaaaaattgaagatcgtttaattttgttgtgtctggac...

Basic information

species Glycine max
transcript GLYMA07G18530.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18530.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 5'ss of exon 10
TGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTACTTGAGTTTTAAAGACTGgtaagttca---tagctactatgctttattgacg-taagttatccatatttcgatcttgccattcctaaaaattgaagatcgtttaattttgttgtgtctggac
   | ||  ||||| ||| | ||||| | || ||||||||||||   ||| ||| | |||||||||||||||| ||||| ||| | |||||||| || ||||||||| |    |||  | || | || | || | |  | ||  | |  | |  | | |  | |  | | | ||    || ||| ||||| ||   |       
AAACAGATGTTACTGCTGGAATGCTTTTGAAGGATGCTGCTTATACAGCTGCTGGTCATGTTTATTATGAACTTTCAAATTACCTTAGTTTTAATGAATGgtaagttaaaaagagcagcaataccttgtagaagattggatagtcttcatacattttagttagtgttgacatttttctat-gttgaatttagtgaagatga---

upper sequence: GLYMA07G18530.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 10
TGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTACTTGAGTTTTAAAGACTGgtaagttcatag----ctactat----gctttattgacgtaagttatccatatttcgatc-------ttgccattcctaaaaat-tgaagatcgtttaattttgttgtgtctggac-----------------------------------
|  | ||||| ||||||||| |||||||||||||||| || || | ||||||||| ||||| || ||||| ||||| || ||  | | ||| | ||| ||||| | || |      ||| | |       || ||  | |  | | |  | || | || |       |||| |  |   | ||| |||  |  ||||   || ||   ||    |                                    
TTACTGAAATAACTCCTGCACTGCTTCTTAAAGATGCGGCATACGCTGCTACTGCATATGTCTACTATGAGCTCTCGAATTATCTTAATTTCAGAGATTGgtatgctcttgatcttctaatgtctgaatcttttttccatctgctctaaacatcttgacccttcattttgctagccagcagaatgtgacaaaagttttgattagtcaagtaattattgtacccttcttaatgatcggatgattggctgcag

upper sequence: GLYMA07G18530.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0217g00060.t01 (Vitis vinifera), 5'ss of exon 9
TGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTACTTGAGTTTTAAAGACTGgtaagttcatagct-actatgctttattgacgtaagttat--ccatatttcg---atcttgccattcctaaaaattgaagatcgtttaattttgttgtgtctggac
|  | ||||| ||||| |  |||||||||||||| ||||||||| | ||| | ||  ||||||||||||| || || |||||| |||| || ||||| ||||| || |||   | ||  |  | |||||   |  ||| |    || | |     |  ||  || |  ||   | | |  ||  ||  |||   |||| | |    
TCACTGAAATCACTCCAGGGTTGCTTCTTAAAGACGCTGCTTATAGCGCTGCGGCACATGTTTATTATGAGCTTTCCAACTACCTGAGCTTCAAAGATTGgtatgtccatcattcacactattatattggtatttgttctaatgatgtcttacacagtttttcagttttacgtagt-ataattatt--attccattgtttttc---