Sequence
atgc intronic sequence ATGC exonic sequenceCATAAACTCTGCAGTTGGAGCTCTTCTCGTTAGTTTCACAGTCTACATCATCCCCGCCACAGCTCATATGCTCACTTACAGAAAAGCCTCAGCAAGACAGgtataaaatcattcaatattttttgtacacttctatggcttctaagttctaactcaccttatttacatcataattcatagggtatgttagagtatagtga...
Basic information
species | Glycine max |
transcript | GLYMA07G17810.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G17810.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 8
CATAAACTCTGCAGTTGGAGCTCTTCTCGTTAGTTTCACAGTCTACATCATCCCCGCCACAGCTCATATGCTCACTTACAGAAAAGCCTCAGCAAGACAGgtataaaatcattcaatattttttgtacacttctatggcttctaagttctaactcaccttatttacatcataattcatagggtatgttagagtatagtga---
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TATTAACTCTGCCGTCGGGGCCCTTTTGGTTAGCTTCACTGTCTACATCATCCCATCTCTGGCTCATATGCTCACTTACAGAAAGGCCTCTGCCCGTCAGgtatacatgcgtgtggtgtttttttt---cttttaagaattagaagttcgattaaaatttagtagagaagggggtgggatgaatacttaagttgtaataatgt
upper sequence: GLYMA07G17810.2 (Glycine max), 5'ss of exon 9
lower sequence: PP1S211_67V6.1 (Physcomitrella patens), 5'ss of exon 7
CATAAACTCTGCAGTTGGAGCTCTTCTCGTTAGTTTCACAGTCTACATCATCCCCGCCACAGCTCATATGCTCACTTACAGAAAAGCCTCAGCAAGACAGgta-taaaatcattcaatattttttgtacacttctatggcttctaagttctaactcaccttatttacatcataattcatagggtatgttagagtatagtga--------
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CATTAACTCCACCGTTGGAGCCCTTCTGGTTACTTTCACCGTCTACATCATCCCCTGTGTCGCTCACATGGTCGTGTACCGCGGTGCAACAGCCCGCCAGgtaatcaacgaactctacctctcttcgcgagtcaagttgtgtttactcggttattcattaaacaaatgacagaaatc-tgacaaactttgggccattgtaaatctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207776701|gb|GD748763.1|GD748763EST: TCCCCGCCACAGCTCATATGCTCACTTACAGAAAAGCCTCAGCAAGACAG AATGCTGCTGAGAAGCCTCCTTTCTTTATGCCAAGCTGGACTGCAATGTAT
genomic: TCCCCGCCACAGCTCATATGCTCACTTACAGAAAAGCCTCAGCAAGACAGgtataaaatc ... gttttctcagAATGCTGCTGAGAAGCCTCCTTTCTTTATGCCAAGCTGGACTGCAATGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATAAACTCTGCAGTTGGAGCTCTTCTCGTTAGTTTCACAGTCTACATCATCCCCGCCACAGCTCATATGCTCACTTACAGAAAAGCCTCAGCAAGACAGgtataaaatcattcaatattttttgtacacttctatggcttctaagttctaactcaccttatttacatcataattcatagggtatgttagagtatagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA