1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGGACTTTGGCATACATTGTGTGTTTCTGTAAATGGTCAAATTTATGCATTTGGTGGGAATCAGTTTGGACAATTGGGTACCGGTAGTGACCAGCCTGAGgtatgttttccttaattgttagatctctttgttttcattagaacaatatcagacacatgcttttagaagattttggaaaaaatagtgttagataggaccc...
species | Glycine max |
transcript | GLYMA07G16400.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGTGGGAATCAGTTTTGGACAATTGGGTACCGGTAGTGACCAGCCCGAG ACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGTEST: gi|10846272|gb|BF069195.1|BF069195
genomic: TGGTGGGAATCAG-TTTGGACAATTGGGTACCGGTAGTGACCAGCCTGAGgtatgttttc ... ccttgttcagACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGT
EST: AGTGACCAGCCTGAG ACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGTEST: gi|208260258|gb|GE060624.1|GE060624
genomic: AGTGACCAGCCTGAGgtatgttttc ... ccttgttcagACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGT
EST: TTGGTGGGAATCAGTTTGGACAATTGGGTACCGGTAGTGACCAGCCCGAG ACTTCACCTAGACAGTTGGATGEST: gi|207710137|gb|GD691199.1|GD691199
genomic: TTGGTGGGAATCAGTTTGGACAATTGGGTACCGGTAGTGACCAGCCTGAGgtatgttttc ... ccttgttcagACTTCACCTAGACAGTTGGATG
EST: TTGGTGGGAATCAGTTTGGACAATTGGGTACCGGTAGTGACCAGCCCGAG ACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGTEST: gi|11690192|gb|BF597868.1|BF597868
genomic: TTGGTGGGAATCAGTTTGGACAATTGGGTACCGGTAGTGACCAGCCTGAGgtatgttttc ... ccttgttcagACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGT
EST: AGTGACCAGCCTGAG ACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGT
genomic: AGTGACCAGCCTGAGgtatgttttc ... ccttgttcagACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACTTTGGCATACATTGTGTGTTTCTGTAAATGGTCAAATTTATGCATTTGGTGGGAATCAGTTTGGACAATTGGGTACCGGTAGTGACCAGCCTGAGgtatgttttccttaattgttagatctctttgttttcattagaacaatatcagacacatgcttttagaagattttggaaaaaatagtgttagataggaccc
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaaa