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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcctaaatgcttaaaatgcttccactcactggcttaagggttcaatttttaattaccttcaatagcctaagaataatgagaagttcacacatc...

Basic information

species Glycine max
transcript GLYMA07G15170.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15170.4 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc-taaatgcttaaaatgcttccactcactggcttaagggttcaatttttaattaccttcaatagcctaagaataatgagaagttcacacatc
|| ||||||||||||||||| || |||||||| || ||||| ||||||| ||||| ||| ||||| |||||| | |||||| | |||||  |  |||| |||||| |||  | |  |   || |||   | | | ||       |         | | ||||   |     | |  |  ||   |  |   |  |      
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagagaccaatatgtggctagtaacatatgatacttgatgcctgtcaattgtatgtgtcaactaactaactcttgggtatgtatctgc-

upper sequence: GLYMA07G15170.4 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcct----aaatgcttaaa--atgcttccactcactggcttaagggttcaatttttaattaccttcaatagcctaagaataatgagaagttcacacatc
|| || |||||||||||||| || |||||||| || ||||| || |||| ||||| ||| ||||| |||||| |||||||| | |||||| |  |||| |||||| |||      |   |  ||||  |||||   |  |  |  ||      |  |  | | |||||  || | || |    || || |     | | |      
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttctacgagaggcgaataaattatgctaatatacgatatctgtcaaatatatgtgtcaattaa-ttaactaactcttgagtatttctctgctaat-----

upper sequence: GLYMA07G15170.4 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 9
GCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcctaaatgcttaaaatgcttccactcactggcttaaggg--ttcaatttttaattaccttcaatagcctaagaataatgagaagttcacacatc-
|||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| | || ||| | || |||||||||||||| |||||| |  ||||||||||||||| |   |  |||   | | |    |||   || | |     || ||  |    ||    |||| |||      ||  |||||| | ||   |   
GCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTGGTGTTGTCAAGTTAATGGGTCGCTACAGCGgtaagtttcatg--tctttattgtccatatgttcatctgcctcacttcttttaaggtagtcttcatgtcaacagctcttctattctgagaa-tgcatggagga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33390216|gb|CA853423.1|CA853423
EST:     AAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCG                         GATTTATTGCAATGTATGCTACACTTGCAAGTCGAGACGTGGACTGTTGCT
genomic: AAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc ... tatgatgcagGATTTATTGCAATGTATGCTACACTTGCAAGTCGAGACGTGGACTGTTGCT
EST: gi|7591258|gb|AW706995.1|AW706995
EST:     AAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCG                         GATTTATTGCAATGTATGCTACACTTGCAAGTCGAGACGTGGACTGTTGCT
genomic: AAGTGTTGAAAATGGCATAGGTGTTGTCAAGTTGATGGGTAGAAACAGCGgtaagtttcc ... tatgatgcagGATTTATTGCAATGTATGCTACACTTGCAAGTCGAGACGTGGACTGTTGCT