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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTTCATATTTGGACATTGATGGGCATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagccttacaagttcttcagttttactgttgtttatgttctagtgatgccctgctcaccctttgtgataactggtttaataaatatcag

Basic information

species Glycine max
transcript GLYMA07G09850.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g04320.t01 (Vitis vinifera), 5'ss of exon 7
GCTATTTCATATTTGGACATTGATGGGCATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagccttacaagttcttcagttttactgttgtttatgttctagtgatgccctgctcaccctttgtgataactggtttaataaatatcag------------------------------------------------------------------------------------------------------------------
||| | ||||||   |||||||||||| || |||||||| ||||||||  ||| ||||||||| ||||||| ||  |   |||| | ||||| ||  ||||||| | | |    | ||    ||| |    |     |||  |    |   | | ||    |  | |   || ||    | |  |  ||||                                                                                                                  
GCTGTCTCATATGGTGACATTGATGGGTATCGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTCATTCCTAAGAACCAAGgtaaacat-attgatgctcagctttcatcaat-----tgtcatcacaacctcattcttcttcactttagaaattgtaaaattgcaactcagtcttggagcatttgctttgtttccaactttccatttcatttggaagttattaactgcaatatttttctttggattcaatccatcccccttaatggcttcttaaacatgtaacag

upper sequence: GLYMA07G09850.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv11s0016g04300.t01 (Vitis vinifera), 5'ss of exon 6
GCTATTTCATATTTGGACATTGATGGGCATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTCTTACCTAAAAATGAAGgtaagccttacaagttcttcagttttactgttgtttatgttctagtgatgccctgctcaccctttgtgataactggtttaataaatatcag------------------------------------------------------------------------------------------------------------------
||| | ||||||   |||||||||||| ||||||||||| ||||||||  ||| ||||||||| ||||||| ||  |   |||| | ||||| ||  ||||||| | |    |  |  ||||||||    |   |  |||  |    |   | | ||   ||  | |   || ||    | |  |  ||||                                                                                                                  
GCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTCATTCCTAAGAACCAAGgtaaacatattga--tgctcagtttt--catcaat--tgtcatcacaacctcattcttctccactttagaaattgtaaaattgcaactcagtcttggagcatttgctttgtttccaactttccatttcatttggaagttattaactgcaatatttttctttggattcaatccatcccccttaatggcttcttaaacatgtaacag