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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgggtgtgcttgcattttcatattaatccatgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag...

Basic information

species Glycine max
transcript GLYMA07G06780.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06780.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 9
TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgggtgtgcttgcattttcatattaatcca--tgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag
     | || || |||||  |||||||||||||||| |||||||| |||||| ||||| | ||||||||| || |  | || ||||| ||  |||||||||| ||||   |     |||| | |  | ||  | ||    |      || || | || |  |  | ||||   ||  | |      |     |||  |    
GCTAAGAACCGGTCAACCTTTATGCATATATGAACCCTATTTTGGTGAAGGAACCTGGTCGTTTCTACATCAAGATCCCCTCTATCGTGGGGTTGGCCTGgtgagtt---tccatgtgcaatatagtgtttttgcaaccataagatggtccaaaggagagaaattgttctcaactgatttgaatgtatcatattgcag----

upper sequence: GLYMA07G06780.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 9
TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttg--ggtg-tgcttgcattttcata------ttaatccatgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag----------------------------------------------------------------------------
|||  ||||||| |||||| | ||||| ||||| ||||| |||||||||||| | ||||||||| | |||   |  || ||||||||||||||||| ||||| ||||     || || |    |||| ||       ||  |  || |       ||||   |||   ||   |  ||| ||||| |   | |   | | | ||                                                                                 
TGAAAGGACAGGTCAACCGTTGTGCATTTATGAGCCTTACTTTGGGGAAGGAACTTGGCCTTTTTTGCATGCTACTTCACTTTATCGAGGAATTGGGCTGgtgagttacaaatgatgttaatgtttttatggataccttcttttatatcaaatgatgcagtagatgggatcagtggtggccttgtatgctagactagttgtttttcttacagttgatggaatctatataaaagatgaaatttttttctccgatctgatctggatccatggaattgatgattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813193|gb|BI785468.1|BI785468
EST:     GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTG                         TCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
genomic: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttggg ... atgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
EST: gi|6718603|gb|AW306250.1|AW306250
EST:     GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTG                         TCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
genomic: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttggg ... atgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT