1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgggtgtgcttgcattttcatattaatccatgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag...
species | Glycine max |
transcript | GLYMA07G06780.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTG TCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGTEST: gi|9820927|gb|BE556437.1|BE556437
genomic: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttggg ... atgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
EST: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTG TCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGTEST: gi|15813193|gb|BI785468.1|BI785468
genomic: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttggg ... atgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
EST: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTG TCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
genomic: GATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttggg ... atgtttgcagTCCGGTAAAGGTCGAAGACCAGGGAGAGATGATGTTGATGCTCCTTCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCGGACAGGACAACCGCTATGCATATATGAACCTTATTTTGGGGAAGGATCCTGGCCTTTTCTACATAAAAAATCTCTTTATCGAGGAATTGGCCTGgtaagttgggtgtgcttgcattttcatattaatccatgttttccagtgcatatgataatatattttctggtcttgtgtatgaaaaaggctttgttgggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaagg