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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGGACGCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacattattttgaaactgggaaatttataatttatcttgtacttttgatcatcaatctattaaggatttcaacattctgctagtatacttattgg...

Basic information

species Glycine max
transcript GLYMA07G05220.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 9
GAGAGTAGGACGCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacattattttgaaactgggaaatttataatttatcttgtacttttgatcatcaat-ctattaaggatttcaacattctgctagtatacttattgg--------
|||||||| || |||||||| ||||| ||||| |||||||||||||| || |||||||| || ||||||||| ||||||| ||||||||||| || |||||||  |   |||| |  |      |   | | |  | ||   |  | |  || |  |   |  ||||  || ||      || | ||  ||| ||| ||          
GAGAGTAGAACACAGATATTTAAGATCCACACGAGAACCATGAACTGTGAGAGGGATATCCGTTTTGAACTTTTGGCTCGTCTTTGCCCAAACTCAACTGgtaaaatacttatctgaagggcacgttgtctttg-tatactctccattgatggttttggctgttattttgggttcttg-gtttttctcatattctttttccacattcag

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACGCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacattattttgaaactgggaaatttataatttatcttgtacttttgatcatcaatctattaaggatttcaacattctgctagtatacttattgg
|| || || || ||||| |||||||| ||||| |||||||||||||||||  | || || ||||| ||  | || || ||  | |||||||| || || ||||  |      | | |    |      |  ||  |||    |   || | | | | ||| || |       || ||  ||  |                
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCGCGCTTATGCCCAAACTCGACCGgta--agt----tctcgtgcttatacggtagatggttttctctcctctctcggtaaccaagctttggtttgcttgaatctttag----------------

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 9
GAGAGTAGGACGCAGATATTCAAGATACACACAAGAACCATGAACTGCGAAAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacattattttgaaactgggaaatttataatttatcttgtacttttgatcatcaatctattaaggatttcaacattctgctagtatacttattgg
|| || || || ||||| |||||||| ||||| |||||||||||||||||  | || || ||||| ||  | || |||||  | |||||||| || || ||||  |      | | |    |      |  ||  |||    |   || | | | | ||  || |       || ||  ||  |                
GACAGCAGAACTCAGATCTTCAAGATCCACACCAGAACCATGAACTGCGAGCGCGACATCCGATTCGAGTTGCTAGCTCGCTTATGCCCAAACTCGACCGgta--agt----tctcgtgcttatacggtagatggttttctctcctctctcggtaaccacgctttggtttgcttgaatctttag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728032|gb|BW666754.1|BW666754
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|8284561|gb|BE022129.1|BE022129
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|17020866|gb|BM091900.1|BM091900
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|22525902|gb|BU084713.1|BU084713
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|6951898|gb|AW423966.1|AW423966
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|57575942|gb|CX548913.1|CX548913
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|8825642|gb|BE209372.1|BE209372
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|192302202|gb|FG997282.1|FG997282
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|15812375|gb|BI784650.1|BI784650
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|58024535|gb|CX711276.1|CX711276
EST:     AGGGATATTCGATTTGAACTTCTGGTCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AGGGATATTCGATTTGAACTTCTGG-CTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|193329786|gb|FK297052.1|FK297052
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|209728031|gb|BW666753.1|BW666753
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAACGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|209717333|gb|BW659036.1|BW659036
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|58021578|gb|CX708319.1|CX708319
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|163926888|gb|EH040053.1|EH040053
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|19271344|gb|BM887600.1|BM887600
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTCTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|19053066|gb|BM731733.1|BM731733
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|209717334|gb|BW659037.1|BW659037
EST:     GCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: GCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|208286539|gb|GE088627.1|GE088627
EST:     ATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: ATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|19269325|gb|BM885581.1|BM885581
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|26049061|gb|CA785514.1|CA785514
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG
EST: gi|7327091|gb|AW620889.1|AW620889
EST:     AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTG                         GAGCTGATATAAGGAGTGTATGCACAGAAGCTGGTATGTATGCTATCCGTG
genomic: AAGGGATATTCGATTTGAACTTCTGGCTCGGCTTTGCCCAAATTCCACTGgtaccaacat ... ttgtctccagGAGCTGATATAAGGAGTGTATGCACAGAAGCCGGTATGTATGCTATCCGTG