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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatattgtaccagccattcaaaatggaagtgagcaaggtctcttaatttatttttcacaactaattcctgttgtatcgataatttttccatgcag

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669207|gb|BE190314.1|BE190314
EST:     GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAA                         TGCTACATTCAGGAAGATCTTCCCTGAGTATGTGGAGAAGTACAACCAGCA
genomic: GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
EST: gi|13252811|gb|BG363714.1|BG363714
EST:     GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAA                         TGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
genomic: GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAA                         TGCTACATTCAGGAAGATGTTCCCTGA
genomic: GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGA
EST: gi|208275347|gb|GE075615.1|GE075615
EST:     GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAA                         TGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAG
genomic: GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAG
EST: gi|7692130|gb|AW760244.1|AW760244
EST:     GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAA                         TGCTACATTCAAGAAGATCTTCCCTGAGTATGTGGAGAAGTACAACCAGCA
genomic: GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
EST: gi|15285849|gb|BI469740.1|BI469740
EST:     CAACTGTAAGAA                         TGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
genomic: CAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
EST: gi|192331929|gb|FK026713.1|FK026713
EST:     GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAA                         TGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA
genomic: GCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatat ... ttccatgcagTGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAAgtaagtatattgtaccagccattcaaaatggaagtgagcaaggtctcttaatttatttttcacaactaattcctgttgtatcgataatttttccatgcag

- - - - - - - - - - - - - - - - - - - - - - - AGAAGC