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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAGgttacctttctcatctttgttactattctttgtgtaatttaggttgcgaatataattctgaaatttgtctttatataaaatatgtcccatttgtttgtgc...

Basic information

species Glycine max
transcript GLYMA07G02280.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g23180.1 (Oryza sativa), 5'ss of exon 10
GTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAGgttacctttctcatctttgttactattctttgtgtaatttaggttgcgaatataattctgaaatttgtctttatataaaatatgtcccatttgtttgtgc------
||||||||| | || ||||||||||||||||| || ||||| || |||||||| ||||| || || ||||| ||| ||   ||| ||  |     ||    ||     |||||| |      || | ||| |     |  | || |  ||  |  |||      |||   |        
GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGACCAGGATTCTTTAGATTCAAAGCTGAAATTGgt-acagctcttataat-----ctggctttctccaaatttaaggcagttattttatttttgtcgtcattttcagttagtacttgtgatgcatgtcatttttagttt

upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G065839_T01 (Zea mays), 5'ss of exon 10
GTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAGgt-tacctttctcatctttgt-tactattctttgtgtaatttaggttgcgaatataattctgaa-atttgtctttatataaaatatgtcccatttgtttgtgc
||||||||| | || ||||||||||||||||| || |||||||| || || || ||||| ||||| ||||| ||| ||   ||   ||  | |  |   |   | | | |||   || | |  |  || ||| | |  ||||   ||  |||     ||  |   |    |  |  
GTTGTAGATGCTCTTTATGATTGCAAAAGTGAGGTGATTGGGCCAGGTTTTTTTAGATTCAAGGCTGAAATTGgtatattctttatattctggcatttcaccatatatctaaaacagttagtta-catgattttcatcatttcagttcgtatgtgtgatagcatgtccagtcct--

upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 9
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAGgttacctttctcatct-ttgttactattctttgtgt-aattta--------ggttgcgaatataattctgaaatttgtctttatataaaatatgtcccatttgtttgtgc--------------------------------------------------------
|||||||||||  | ||||| |||||||||||||| ||||| ||||||| |||||||||||| || |||||||||     || | | || || ||     ||   |  |  ||||         | |||  ||||  |     |||       |  ||   | |      ||||   | ||                                                          
GTTGTAGATTCTTTATATGACTGCAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAGgtgcgtattttgaactgttattcgctctcaaagaattgatttgttccctatgcttgaaaataagaaggaaaaaggcaaagtcttagcgagtgaagatcattctatcgtattctgaacttcttgagtgattccattgggcactgtattaattgttgtatttaaacag

upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0054g00220.t01 (Vitis vinifera), 5'ss of exon 10
GTTGTAGATTCCCTCTATGATTGCAAAAGTGAAGTTATTGGGCCTGGATTCTTCAGATTTAAGGCAGAAATAGgttacctttctcatctttg-ttactattctttgtgtaatttaggttgcgaatataattctgaaatttgtctttatataaaatatgtcccatttgtttgtgc---
|| || ||| | || |||||||| |||||||| || ||||| ||||| ||||| || |||||||||||||||||| ||||||  ||   |   ||| | |||    | | || | | |||   || ||    | ||   | ||| |||  |  |||| |  ||| |       |   
GTAGTTGATGCTCTATATGATTGTAAAAGTGAGGTGATTGGACCTGGGTTCTTTAGGTTTAAGGCAGAAATAGgtaacctttgccacagtaacttatttttcagatttttatgtggtttggttatctataggtcaa---tatctctatg-aggatatctaacatctccacacccata