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GTTCCAACTATCTATGCCCGATTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaagaggcattgtggcatccatcaaacaattttatttcttataagaacataaatgggaagttgtttgaattttaaaaaaatggacaatattga...
species | Glycine max |
transcript | GLYMA07G02180.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATG ATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCCEST: gi|162286164|gb|FC456612.1|FC456612
genomic: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaa ... tagcattcagATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCC
EST: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATG ATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCCEST: gi|17153356|gb|BM143289.1|BM143289
genomic: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaa ... tagcattcagATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCC
EST: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATG ATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCCEST: gi|151393469|gb|EV263344.1|EV263344
genomic: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaa ... tagcattcagATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCC
EST: CTGAGCTACAAGCTGCTTC--TATCTGCTGCAAAGAACTTGCGTCTTATG ATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCCEST: gi|9205100|gb|BE331324.1|BE331324
genomic: CTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaa ... tagcattcagATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCC
EST: CTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATG ATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCC
genomic: CTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaa ... tagcattcagATGTGTGGGTCCTCTGCACTTCCACTGCCTGTTATGCAAGAATGGGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAACTATCTATGCCCGATTGATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCTGCTTCAGTATCTGCTGCAAAGAACTTGCGTCTTATGgtaagagaaagaggcattgtggcatccatcaaacaattttatttcttataagaacataaatgggaagttgtttgaattttaaaaaaatggacaatattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC