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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGgtagtatggctttcatgtgtcttttgaatagatttcaaaatgctatgtcttatgtgtttggatatacaaacatacatgcttcttaattgtggaacag

Basic information

species Glycine max
transcript GLYMA07G02170.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02170.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g62040.1 (Oryza sativa), 5'ss of exon 9
AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGgtagtatggctttcatgtgtcttttgaatagatttcaaaatgctatgtcttatgtgtttggatatacaaac-atacatgcttcttaattgtggaacag
||| ||||||||||| ||||| ||||| ||||| ||||| ||  | ||||| |||||||| ||||||||  |||| || |||||  |||| ||||| |||||    ||  |||   | |||||        || |||    | || |  || | ||| | || ||       || | ||||  |      | | |   
AGGAACTGATATGACAAGTCCGCATGGTATACCAGTTGATCTTCTAGATCGATTGGTGATTATTCGAACAGAAACATACGGTCCCACTGAGATGATCCAGgtt---tgatttt---gggtctt--------atatca----gttaggctttttctgtctagaaatgtgtgtgattcttgctcatcgccgtttgcag--

upper sequence: GLYMA07G02170.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G032267_T02 (Zea mays), 5'ss of exon 9
AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGgtagtatggctttcatgtgtcttttgaatagatttcaaaatgctatgtcttatgtgtttggatatacaaacatacatgcttcttaattgtggaacag
||| || |||||||| ||||| ||||| ||||| || |||||  | ||| |||||||||| ||||| ||  |||| ||||| ||| |||| |||||||||||          || | | |  ||||   |   || |      | | | || | |    |  | | |  | ||   || | |||     |   ||||
AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGGTTGGTGATTATTCGGACAGAAACATATGGCCCTACTGAGATGATACAGgt----------tcttatttaatttgggcatgctttatgtcttttttttttctat-ccagagtttgcgtaaatctttgttccttgcccttt--acag

upper sequence: GLYMA07G02170.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 5'ss of exon 9
AGGGACTGATATGACCAGTCCTCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGgtagtatggctttcatgtg---------tctt--ttgaatagatttcaaaatgctatgtcttatgtgtttggata--tacaaacatacatgcttcttaattgtggaacag----
||| ||||||||||  |||||||||||||||||||||||| |||| || |||||||||||  | || ||| |||| |||||||||||||| ||||| |||||  |  | || |||| ||         ||||  || ||   | ||  || | ||    |  || | |     |   | | | |  |  |  |||||  |||| || |      
AGGAACTGATATGAGTAGTCCTCATGGCATACCTGTTGACTTGTTAGACCGGTTGGTGATTGTACGGACGGAAACTTATGGTCCTGCTGATATGATTCAGgtcat-cgtctatcatttggagacttgttcttagtttaacccactttcaacttctggaacacat-tatcaaattccctcctatctgatgtttttcttctttgttgatcgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197378|gb|HO044857.1|HO044857
EST:     GGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAG                         ATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT
genomic: GGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGgtagtatggc ... tgtggaacagATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT
EST: gi|209704962|gb|BW664839.1|BW664839
EST:     GGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAG                         ATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT
genomic: GGTTGGTGATCATTCGAACGCAAACCTATGGTCCTGCTGAAATGATACAGgtagtatggc ... tgtggaacagATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAAGAAAGT