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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTTCGAGGTCGCCTTCCTTGGCAGGGTTTCCAGgttggacatattaaaatgattgaagttttattattatgttcagaattgttggtctctaacattattttctcag

Basic information

species Glycine max
transcript GLYMA07G01890.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g11140.1 (Oryza sativa), 5'ss of exon 9
ACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTTCGAGGTCGCCTTCCTTGGCAGGGTTTCCAGgttggacatatt---aaaatgattgaagttttat-tattatgttcagaattgttggtctctaac-attattttctcag----------
 || ||||| ||||||| |||||| || |||||  | ||||| ||||| ||||||||  |||||||| | || ||||||||||||||||| || | ||||||      | ||   |    || |    |||||| | ||   ||   ||   || |||  ||   |   || | |             
TCACTTAGGAAGAACTGGAAGCAGAAGAGATGATCTTGAATCCCTTGCCTATACACTTGTTTTTCTTTTACGGGGTCGCCTTCCTTGGCAAGGATACCAGgtgaagtttgtttgcagtgcgaatctttttttatctgttcgttttgcaaccttttgtccttagttacctttgtgttgatatattttag

upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 9
ACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTTCGAGGTCGCCTTCCTTGGCAGGGTTTCCAGgttggacatattaaaatgattgaagttttattattat--gttcagaattgtt--ggtctctaacattattttctcag
 ||||| |||||||||| |||||||||||||||| | ||||||||||| || |||||  | |||||||| || ||||||||||||||||| || | ||||||      | ||| ||      || |||  | ||||    | |    ||  |    | |  | ||  ||  | | ||
TCATTTGGGGAGAACTGGAAGCAGGAGGGATGACCTTGAATCTCTTGCCTACACACTTGTATTTCTTCTGCGTGGTCGCCTTCCTTGGCAAGGATACCAGgtgaactttgttacaacctccaaattttcttaattactgatccccccttactcaaattttcagcaaaatgattttag

upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G095634_T01 (Zea mays), 5'ss of exon 2
ACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACACTGATTTTTCTTCTTCGAGGTCGCCTTCCTTGGCAGGGTTTCCAGgttggacatattaaaatgattgaagttttattattatgttcagaat-tgttggtctctaacattattttctcag------
|||| | |||||||| |  |||||||||||||| || |||||||| |||||||||||  | |||||||| |||||  | || |||||||| ||||  |||||   | |||  |   |      | || ||||  | ||       | | |  ||   | |  ||  |||  ||       
ACATCTTGGGAGAACAGGTAGCAGGAGGGATGATTTAGAATCTCTAGCATATACACTAGTCTTTCTTCTACGAGGATGTCTACCTTGGCAAGGTTATCAGgtaaaatataggatcctccagccacttgtattgatttgagtgatgtatatgtgtacttgatgtttattttgcatctatag