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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAGgtgagtttgtgttgcttattagctccatcttgtctgccttagtaaatgaggttatataatcatttttcaaccataattcag

Basic information

species Glycine max
transcript GLYMA07G01790.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01790.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g45590.1 (Oryza sativa), 5'ss of exon 6
GCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAGgtgagtttgtgttgcttattagctccatcttgtctgccttagtaaatgaggttatataatcatttttcaaccataattcag
|  || || ||||| ||||| |||||| ||||||| || ||||| |||||||| | ||||   ||||||||||| || ||||| |||||| |||| ||||| |  |             || ||||||| || |  | | |  ||  |||    |  ||  ||  |  |  ||  |  ||
GTAATAAATATGGAATGGGGGAACTTCAGGTCATCCCATCTTCCTTTGACTGAATTTGATCAAGCATTAGATGCTGAAAGTTTGAATCCTGGTGAACAGgtaacataaaa---------agatccatctcgtatttcattgccaactaggacgaagcat--ttcattcattattttgtag

upper sequence: GLYMA07G01790.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g03390.t01 (Vitis vinifera), 5'ss of exon 6
GCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAGgtga--gtttgtgttg----cttattagctcc---atcttg--tctgccttagtaaatgaggttatataatcatttttcaaccataattcag------------
| |||||||||||||||||| |||||  |||||||||| || ||||| || ||||||||  ||||| | |||   || |||||||| ||| |||| |||||||  || | | ||      ||  ||| |||    ||||   | ||| |  ||   ||   | ||   |    | ||| |  ||  || |             
GTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAGgtgattgtatatatttaaatttttgtagttcctaagtctttgctttgcttctgtgtttgtcatgatgctacacatattctaagatttttaatgcttttccacag