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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCATATATACCTGCAGCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaacttagtctccttttctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag

Basic information

species Glycine max
transcript GLYMA07G01660.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01660.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g36560.2 (Oryza sativa), 5'ss of exon 9
CGGCATATATACCTGCAGCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaacttagtctccttttctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag----------
     | |    |||||||||||| ||||| |||||||||||||| |   | || |||||||| | ||| || || |||||  | || ||||| ||||||||  |  |  ||| | | |  |   | ||     || ||    | || ||||| | |||     |     | | | |  |   |||  |  ||| |           
AATGGTTTTCTTCTGCAGCAAATACGACCTGTACAGCAAGAGCAATGAGAGGATAGACGTTGAGAAGGTGAAGCCCTACTACATGTCACTCATCGAAAAGgtatgatcgattttgcagcgaa---tactgaagcttgaaacagacttctttttgtcctaaaacctgaa--gaaatgatcttctttttctctctgaattctctcgcag

upper sequence: GLYMA07G01660.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 10
CGGCATATATACCTGCAGCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaac-ttagtctcctttt--ctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag--
                  |||||||||||||||||||||||||||||| ||||| || ||||| | |||||| || |||||||| |||||||||||||||||||| || | |        ||||   || |||  | || ||| |||    | |||||   |||||        | | ||  | | | ||      |  |  
------------------CAAATATGACCTTTACAGCAAGAGCAAAGTCCGAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactgctctattttgttagaacccatttgacattgaatataaggagtgtttcta--agttttctaacacttcaaatttttttatcaaaatagttgtt

upper sequence: GLYMA07G01660.2 (Glycine max), 5'ss of exon 9
lower sequence: EFJ20873 (Selaginella moellendorffii), 5'ss of exon 9
CGGCATATATACCTGCAGCAAATATGACCTTTACAGCAAGAGCAAAGTTCGAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccgtttggaaacttagtctccttttctttcaatttaaattttttttcttctagtttgtagtttgtactaaagtgtctttctttgctgcag
                  ||| ||||||||||||||||||||||||||  || | || || |||   |  |||||||| || ||||| |||||||| ||||| ||| |             |||   || ||  ||| ||  | |    |     |    | | |  | | | ||     |                
------------------CAAGTATGACCTTTACAGCAAGAGCAAAGTCAGAGTCGATGTGGAAGCCGCAAAACCATATTACCTCTCACTCATTGACAAGgtgagttcta-----------agttctctctttgttctatcaagaacactcaaaatgggatct-tgatctcttcttggcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31456874|gb|CD398902.1|CD398902
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|31312066|gb|CD397269.1|CD397269
EST:     GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGACCAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGACGTTGAAAGGGTCAAACCATACTATCTCTCCCTCATTGAAAAGgttagtaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG