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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagttttatgtattttacttctgtactcactaattctgtactaattttgttaagtgctcatttctttttttttttccctcttttctacaagcag

Basic information

species Glycine max
transcript GLYMA06G45160.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162286177|gb|FC456625.1|FC456625
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGTACATTGCCTTTTGCATTTTAGCTGCAGTTACTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|31474417|gb|CD416445.1|CD416445
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|209724206|gb|BW658112.1|BW658112
EST:     CTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: CTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|22928614|gb|BU545753.1|BU545753
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|9899156|gb|BE608183.1|BE608183
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|192320764|gb|FK013854.1|FK013854
EST:     GACTGACAGTGTTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|209700002|gb|BW661218.1|BW661218
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|21887940|gb|BQ741153.1|BQ741153
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|209723674|gb|BW662569.1|BW662569
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|15284739|gb|BI468630.1|BI468630
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC
EST: gi|31459116|gb|CD401144.1|CD401144
EST:     GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATG                         TTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATNATCTTC
genomic: GACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGgcaagtttta ... ctacaagcagTTGCACATTGCCTTTTGCATTTTAGCTGCAGTTGCTCCACCAATTATCTTC