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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaatattctgttaaatatgaaatttgaataataattaagcacaacatttttaaattcaaaccttggagacatgatgagctgattgcagagcat...

Basic information

species Glycine max
transcript GLYMA06G43840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g24704.1 (Oryza sativa), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaatattctgttaaatatgaaatttgaataataattaa--gcacaacatttttaaattcaaaccttggagacatgatgagctgattgcagagcat
 || |||||  | ||  | || |||||  | || | |||||  | |||||||||||| || || ||||||||||| ||||| |||||||| ||||||||||| |  |   |    | ||   | | |  |||| ||       ||  | |    ||  ||| |||  ||  ||    |  | |     | |           
TGGCCAAGGTTTGAAGACAGAGAATCGCATAGGAATTTTCAAAGCTGAATTTGATGTCCAGTCTACATTTGAGGGCGACAATAATGTTCTAATGCAGCAGgttattttgct----tattgtttgtcatctttgtatttctcccaaaggtattttatgcttagatt--aattttaactatttaaccttttcag----------

upper sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G014136_T01 (Zea mays), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaatattctgttaaatatgaaatttga-ataataattaagcacaacatttttaaattcaaaccttggagacatgatgagctgattgcagagcat
||| |||||  | ||  |||| || ||  | || | |||||    |||||||||||| || || ||||||||||| || |||||||| || ||||||||||| |      | ||| || |   ||  | |||   | |     |  |       || | | | |  |||||||   |                        
AGGTCAAGGTCTAAAGACTGAGAACCGCATAGGAATTTTCAAATCTGAATTTGATGTCCAGTCCACATTTGAGGGTGATAACAATGTGCTAATGCAGCAGgttattgttgttttcagtcatgcatccattttatcaaaggtgcttcgtgtgtggttgtaacaatttaaccttgtttag-----------------------

upper sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaatattctgttaaatatgaaatttgaataataattaagcacaacatttttaaattcaaaccttggagacatgatgagctgattgcagagcat--
||| ||||| || ||| | |||||||  |||||  | || |  |||||||||||||||||  | ||||||||||| ||||| |||||  |||||||||||||||   | | ||| |        ||  ||||| || || | ||  |   | ||||     ||   ||| |  |    |  |   | | |||  ||   |  
AGGGCAAGGTGTGAAAACAGAAAATCTAGTTGGTCAGTTGAAAGGTGAATTTGATGTGCAGACTACATTTGAGGGTGACAATAATGTATTGATGCAGCAGgtaagcggcacattat--------tgtgatttgcatgatcaata--ctgtaaatttccctgttttgaccatacaattttactttaccg-ttggggaatttag

upper sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 9
AGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaatat-----tctgttaaatatgaaatttgaataataattaagcacaacattttta-aattcaaaccttggag-acatgatgagctgattgcagagcat
 || |||||  | ||  ||||||||||  ||||  |  | |  ||||||| ||||||||| || ||||||||||| |||||||| ||||||||||| |||||||  |  ||||     | | || |  ||||| | | |   | ||  | |  |||||  || |  |  || |  | | |     | |   | | |   ||      
GGGGCAAGGCTTGAAGACTGAAAATCGGATTGGGCAAATGAAAGGTGAATATGATGTGCAATCCACATTTGAGGGTGACAACAACGTTCTGATGCAACAGgtaatgtctatatatcagtttctttatgatgaactctcatgtacaaggacg-gcaacacgttgatgacacagatatggcaatgtctaacatggtcacctca------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996941|gb|CF808530.1|CF808530
EST:     TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAG                         ATTAGCAAGGCACTCTTTGCAGAATATATAGCATGTCAGAAGAAAAACAAA
genomic: TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaa ... ttaactccagATTAGCAAGGCACTCTTTGCAGAATATATAGCATGTCAGAAGAAAAACAAA
EST: gi|58023823|gb|CX710564.1|CX710564
EST:     TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAG                         ATTAGCAAGGCACTCTTTGCAGAATATATAGCATGTCAGAAGAAAAACAAA
genomic: TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaa ... ttaactccagATTAGCAAGGCACTCTTTGCAGAATATATAGCATGTCAGAAGAAAAACAAA
EST: gi|12774606|gb|BG239533.1|BG239533
EST:     TTGATGTGCATTCCACATTTGAAGGGGACAACAATGTTCTGATGCAGCAG                         ATTAGCAAGGCACTTCTT-GCAGAATAT
genomic: TTGATGTGCATTCGACATTTGAGGGGGACAACAATGTTCTGATGCAGCAGgtaaaatgaa ... ttaactccagATTAGCAAGGCACT-CTTTGCAGAATAT