Sequence
atgc intronic sequence ATGC exonic sequenceGACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacag
Basic information
species | Glycine max |
transcript | GLYMA06G43820.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 9
GACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGG---CTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacag
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---CGCCTGATGGCAGAGGCAGAAACGAATTTGGCTATTAATGTTCTCCCTGGACCATTATCAGAATCTTATGAAGTTCAAGGAAGAGGAGAGCTTCAGTTAGgtctgga-ttgttgatgaaatcccacctattctattgtataattgagcttaagttaactcttttggaagttcctca--tactttaattaatgtgtaatcaaga------
upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G128688_T01 (Zea mays), 5'ss of exon 9
GACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGC---TTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatga--ttttccgtgcttacacagctgattatggcatcatattaacag-----------------
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---CGCCTGATGGCAGAGGCAGAAACGAATTTGGCTATTAATGTTCTCCCTGGACCATTATCAGAATCTTATGAAGTTCAAGGAAGAGGAGAGCTTCAGTTAGgtctgga-ttgttgatgaaatcccacctattctattgtataattgagcttaagttaactcttttggaagttcctcatactttaattaatgtgtaatcaagaatacaaaatgatctgtgtatgttccag
upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 9
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 5'ss of exon 9
GACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttcttgtttctttgaaattgcatgatc-ctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagctga--ttatggcatcatattaacag-------------------------
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GACCGGTTAATGGCAGAAGCTGAAACAAATCTTGCCATAAACGTTATTCCAGGCTTGTCAGAGTCATATGAAGTCCAAGGGAGAGGAGAACTTCAACTTGgtttgttcttttccagtttgtgtttagtgtttgttcacctgtaa-agacggatataaagtatg-acacacgccagaaaacacgtaactgtatttatttctctatgccaggtaaattaatttctgtcgtgtctaacag
upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 9
GACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttc----------ttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactcc-atgattttccgtgcttacacagctgattatggcatcatattaacag------------------------------------------------
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GACCGATTAATGGCGGAAGCAGAAACAAATCTAGCCATAAATGTGCTCCCAGGATTATCAGAATCATATGAAGTTCAGGGGAGGGGAGAGCTTCAACTGGgtgagttccgttaatcatttatccatcttctatctcatattttaccaagttaaagcaaaaaaggaaaagttcttattatactgctacttttcccttttacgtctcaaattttgttcgccattaagttcaattgtcttctgaatgtggtttttatgttgtgcaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10238336|gb|BE807152.1|BE807152EST: AGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGG GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTC
genomic: AGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttctt ... atattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGgtttgttcttgtttctttgaaattgcatgatcctcactgttattatatgcatataaaaactccatgattttccgtgcttacacagctgattatggcatcatattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG