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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataaacccaatcttctgtttctttccactatcattttccttacactgcaagatcctgagagatgaagatagtaggattttactgttttcttacatacatttgattttatattacag

Basic information

species Glycine max
transcript GLYMA06G42830.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g35540.1 (Oryza sativa), 5'ss of exon 9
ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataaacccaatcttctgtttctttccactatcattttccttacactgcaagat---cctgagagatgaagatagtaggattttactgttttcttacatacatttgattttatattacag
||||| |||||||||||||||||  ||||||||||||| || |||||  ||||||| ||||| ||||| |||||||| |||||||| || || ||||| | | |      || |   |     | | | |    |||||||   ||  | |  |     | |    |||    ||    |||||  |   ||||  | | | |  |              
ATTGGAATGTTCTGCTACAGTGGTATGACACCTGAACAAGTCGATCGCTTGACAAAAGAGTTCCATATCTACATGACTCGTAACGGGCGGATAAGgtactca-atctttcatatatagagagctcctaattctgttttcctcgtacatctatctgcatttcatgagtgagctgagcctaattttttt-cattctctcctccttcag--------------

upper sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g14110.1 (Oryza sativa), 5'ss of exon 9
ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataaacccaatcttctgtttctttccactatcattttccttacactgcaagatcctgagagatgaagatagtaggattttactgttttcttacatacatttgattttatattacag
||||| |||||||||||||||||  |||||||||||||||| |||||  | || || || |  |||||||||||||||||||| ||  | || |||||   |  |||   |  ||  |||| |         ||| || || |  ||      |  | |  ||  || |   ||   || |    |||  ||                         
ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAACCAATGAATACCATATTTACATGACCCGTAATGGCAGAATAAGgta--caataacagtacttttagttttt---------catgttgctgaatctttg---ttttaatcgaataaaaatctaactttctgtcatttctttcag----------------------

upper sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G146677_T01 (Zea mays), 5'ss of exon 9
ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataaacccaatcttctgtttctttccactatcattttccttacactgcaagatcctgagagatgaagatagtaggattttactgttttcttacatacatttgattttatattacag
||||| |||||||||||||||||  ||||||||||||| ||||| ||| | ||||| || |  || |||||||||||||| || ||  | || |||||    ||    |||| | ||| || |||  || ||||   |  || || || |   |        |||||  ||     | || |    || |  |  | ||                  
ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAAGTTGACCGTTTAACAAATGAATACCACATTTACATGACCCGCAATGGGAGGATAAGgta----tag---caat-tactgattttttttac-atcacgatgatt-cattgaacagtttattagaatgaatcta-----acttcatcccttgcccaatttcag-----------------

upper sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaatt-ataaacccaatcttctgtttctttccactatcatt---ttccttacactgcaagatcctgaga-gatgaagatagtaggattttactgttttcttac--atacatttgattttatattacag
||||| ||||||||||||||||| || ||||| ||||||||||| ||  | |||| ||| | ||| || || |||||||||||||| ||||||||||| || |    | |    ||     ||||||  ||  ||||   | |  | || | |   |     | | | | ||  |    | |    | |   |  | |   |  |  ||||| ||   || |||
ATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGgtacttcactttctcctgattagaaatctttcagctcacattcaatgcaatccatttcctaacatcaacatgcttaatttcaatgcaagccatttcctaatcattgaggctcttgatgtttggttgcag

upper sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0028g01820.t01 (Vitis vinifera), 5'ss of exon 9
ATTGGTATGTTCTGCTACAGTGGATTGACACCTGAACAGGTTGATCGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaa----ttataaacccaatcttctgtttctttccactatcattttccttacactgcaa----gatcctgagagatgaagatagtaggattttactgttttcttacatacatttgattttatattacag
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||||| || || ||||| |||||||||    |  |  |   ||   | | |||  | |   |||  || | ||    |||  |    ||| || |   |  | |  |  |    | ||| |                                
ATTGGCATGTTCTGCTACAGTGGTTTGACACCTGAACAGGTTGATCGAATGACAAATGAATTTCATATCTACATGACTCGCAATGGTCGCATCAGgtaaagtttcctgcattgaagtatttcttttgtgcttgtatttttgttctctttctgtgaattggattcttatctaacacgtgaaaaaatgtgtacag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345073|gb|GR851449.1|GR851449
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|22523470|gb|BU082281.1|BU082281
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|254340272|gb|GR858397.1|GR858397
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|57574406|gb|CX547381.1|CX547381
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|7693011|gb|AW761110.1|AW761110
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|10253391|gb|BE821157.1|BE821157
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|254320419|gb|GR826868.1|GR826868
EST:     GTATGACAAACGAGTTTCATAATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAAC
genomic: GTATGACAAACGAGTTTCATA-TTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAAC
EST: gi|57574152|gb|CX547127.1|CX547127
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|254340271|gb|GR858396.1|GR858396
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|27425343|gb|CA936863.1|CA936863
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|7030016|gb|AW459799.1|AW459799
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|22523639|gb|BU082450.1|BU082450
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|6952111|gb|AW424179.1|AW424179
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
EST: gi|14999882|gb|BI320696.1|BI320696
EST:     CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAG                         TATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA
genomic: CGTATGACAAACGAGTTTCATATTTACATGACCCGTAACGGTCGTATCAGgtaattataa ... tatattacagTATGGCTGGTCTTAATACGGGCAACGTTGGATATGTTGCTGACGCTATCCA