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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgttttataatatcagattaattgatgtttaaagttgcaaagtattttgacttcataaagttgagatggagatttttttcccagctaaaaaaagagttaacatttaatgattttttgtccag

Basic information

species Glycine max
transcript GLYMA06G36130.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36130.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 10
GGGCATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgttttataatatcagattaattgatgtttaaag-ttgcaaagtattttgacttcataaagttgagatggagatttttttcccag----ctaaaaaaagagttaacatttaatgattttttgtccag--------------------
 || || ||    ||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||| ||||| ||||| || |  || || || |||   | || || |||||    ||     | |   || | |||  |  || || || | |||    |||||| | |  |  |  | |||     ||  |    ||    || ||| |    |   | |  |                     
TGGAATAACAATGATAGAGATGGCAAAAGGAGAACCTCCCCTTGCTGACCTTCATCCTATGAGAGTGCTTTTTATCATTCCCCGGGAAAGCCCTCCTCAGgtttcatattcta-aatattgttttggc--acgagaaaggcttgttagatagttggaatgcattgt-ttgagacgaacctaatactgccatatgtcttgattgcgaagccacctttcagagctagatatttaacttgtttatatcctccacag

upper sequence: GLYMA06G36130.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 5'ss of exon 10
GGGCATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtgttttataatatcagattaattgatgtttaaagttg-caaagtattttgacttcataaagttgagatggagatttttttcccagctaaaaaaagagttaacatttaatgattttttgtccag
 || || || |  || |||||||||||||| || ||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| | ||||||||| |||     | || | || | | |     | |   ||| | | | ||  ||  |||| ||      ||  ||  |  |  |||| |   |||                                      
CGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCTGACCTTCATCCCATGAGAGTGCTTTTTATCATTCCTCGAGAAACTCCACCACAGgtttcacatattttcattttaaacatgataaaagttatactggtcactgtgctttgcctc-----agcagaattttaccttttctgggcag--------------------------------------

upper sequence: GLYMA06G36130.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 10
GGGCATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAAgttctgtg----ttttataatatcagattaattgatgtttaaagttgcaaagt-attttgacttcataaagttg------agatggagatttttttcccagctaaaaaaagagttaacatttaatgattttttgtccag
||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||| || || |||         ||   | || ||| | | | | || ||     |||  || | || |||| |    | |||        ||||||| | || ||  |||       ||||  |  | | ||  || ||| |||| |||
GGGAATAACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTCCATCCAATGAGAGTGCTTTTTATAATACCTCGAGAAAATCCGCCTCAGgtttgccaatcattccttgatgtcatacttactaattttc----ttgtcaattgatcttgaataatgagagtcatttaccagatggaaaattattctccatagttctaaaggatagatactttgtg-tttgttgtgcag